Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00184 ATGGCGGCTTTTGCTAAACCCTCCCATCTTCACGCTCAAAGGGACAATCCCATTCTTCCTTCTAGAACCACTTCCACCAACTTCAATTTCAAAACTTTCACTTTCTTCCATAACTTGCTCACACTCAGAAAAGTTAAACATGTTTGTGTCTCAAGTTCTGCCACTACCACCACCTCTCTCAGCAACAATCCCAACTCCGATATTTGCAAGTTTTGCCTCCTTGGGAACTTGGACCGTGCCATGAGCTACTTGGACTCCATGCACGAGCTTCGAATTCCCGTTGAAGATGATGCTTACGTTGCTTTGATACGGCTATGTGAGTGGAAGAGAGCAAGGAAAGAAGGGTCTCGTGTTTTCTCCCATGTTTCCATGTCCATGACTTGTTTGAGCACTCAACTGGGGAACGCGCTTTTGAGCATGTTTGTGAGGTTTGGGAACTTGGTGGATGCCTGGTACGTGTTTGGGAGAATGGAGAAGAGGAATTTGTTCTCTTGGAATGTTTTGGTTGGTGGGTATGCTAAAGCTGGCTTCTTTGATGAGGCACTGGATCTCTATCATAGAATGTTGTGGGTTGGATTGAGGCCTGATGTTTACACTTTTCCTTGTGTTTTGAGGACTTGTGGTGGCATGCCTAACTTGGTGAGGGGCAGAGAGATTCATGTTCATGTTTTAAGACATGGGtttgagtcggatgtggatgtgattaatgcactgataactatgtatgtgaaatgtggggatgtcaatactgcaaggttggtgttcgataaaatgccttatagagacaggattacatggaatgccatgatttctgggtactttgaaaatggggagtgtttGGAGGGACTGAGGTTGTTTGGTAGGATGATTGAACATCCGGTTGATCCTGATTTGATGACCATGACCAGTGTGATTACTGCGTGTGAGCTTCTGGGTGATGAGAGATTGGGGAGGCAAATTCATGGTTATGTTCTGAGAATGAAGTTTGGGAGAGACCCTTCGGTTCATAATTCGTTAATTCAGATGTACTCGTCTGTTGGACTTATTGAGGAAGCTGAAATGGTTTTCTATCATACAGAATGTAGAGATGTGGTGTCATGGACCGCAATGATATCAGGTTATGAGAATAGTTTGATGCCTCAGAAAGCTCTTGAGACATATGAAATGATGGCAGCACAAGGTATCATGCCAGATGAAATCACAATAGCCAGTGCACTCTCTGCTTGTTCTTGTTTATGTCATTTAGACATGGGGATGAACCTTCATGAGGTGGCCAAGCAGAATGGGTTCGTCTCTGATGCGATAGTTGTGAACACACTCATTGACATGTATGCCAAGTGTAAATGCATTGACAAGGCTTTAGAAGTTTTCCACTCTGCTCGAGAGAAGAATATTATATCATGGACATCTATCATCCTTGGTCTTCGGATCAACAACCGGTGTTTTGAAGCCTTATTTTACTTCAGGGAGATGATTCTTAGACTGAATCCAAATTCTGTTTCTTTAATTTGTGTCCTATCTGCATGTGCTAGAATAGGAGCTTTGACATGTGGAAAGGAGATCCATGCCCATGCGTTGAGAACTGGAGTAAGTTTTGATGGTTTTATGCCGAATGCAATTTTAGACATGTATGTAAGGTGTGGAAGAATGGAATACGCTTGGAAACAATTTTCCTCAGTTGATCATGATGTTACCGCATGGAACATTTTGCTAACAGGATATGCTGAGCTTGGGAAAGGAGCACTTGCTACTGAGCTTTTTCAGAGAATGGTAGAGTCAAACGTTAGTCCTGATGAAGTTACATTTGTCTCCATATTATGTGCTTGCAGCAGATCAGGTATGGTGGCAGAAGGCTTGGAATATTTTAACAGCATGGAGTATAAGTACTCTATTACTCCTAATCTGAAACACTATGCATGTGTGGTTGATTTACTTGGTCGTTCTGGGAGTTTGGAGGAAGCTTATGAATTCATAGAGAAAATGCCGATGAAACCTGATCCTGCAGTTTGGGGAGCTTTATTAAATGCATGCAGGATTCACCATGATGTTGAGCTTGGGGAGCTTGCTGCAGAAAATATCTTTCAAGATGATACGACAAGTGTTGGATACTACATTCTTCTCTCTAATCTTTATGCTGACAACAATAAATGGGACAAGGTAGCAGAAGTAAGAAAAATGATGAGACAGAATGGGCTAATTGTAGATCCTGGATGCAGCTGGGTGGAAGTCAAGGGCATAGTGCATGCTTTCCTCAGTGGTGACAACTTTCACCCTCAAATAAAGGAAATAAATGCGATTTTAGAGCGATTTTACATGAAGATGAAGGAAGCTGGTGTAGAAGGGCCAGAAAGCAGTCATATGGACATAATGGAAGCTTCTAAGGCTGATATATTTTGTGGGCATAGTGAGAGACTGGCCATTGCCTTTGCACTTATTAACTCTGGCCCTGGGGTGCCTATTTGGGTGACAAAGAATCTGTACATGTGCCAAAGTTGCCACAGCGTCGTCAAATTTATCTCTACGGAGGTTCGGAGAGAGATTTCTGTAAGGGATGCTGAGCAATTTCACCATTTCAAGGGAGGCATCTGTTCTTGCATGGATGAAGATTCCATTTTACCCAAGAACGCAACTATAGCATCGGTGGGAGACGAGGAAATGTCAAGAAGCAGCAGTTTCCGGCGCAACGGGTGGATCCCCTCCTCCGTAAGACTCAAAACAACCCTCCTCTCGGAGCTCTCCGGCGCGGTGGGAGACTTAGGGACGTACATACCCATCGTGCTGGCTCTCTCCTTAGTCAACAACTTGGACCTCACCACCACACTCCTCTTCACTTCTTTCTACAACATCGCCACCGGCCTCCTCTTTGGCCTCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCCGCCGTCGCCATCTCCGCCTCCCCGCCCCTCACCATCCCTCAAATCTCCGCCGCAGGCCTCTCCGTCGCCGCCGTCctcctcctcctcggcgccaccggcctcatgtccctcctctgccgctacctccccctccccgtcgtccgcggcgttcaactctcccagggcctctctttcgccttctccgccgtcaactacatccgctacgaccaaaacctcgccacctccaaatccggccctccccgcccctggctcgccctcgacggcctcgccgtcgcactcgccgccgtcgtctttctggtcctcaccaccggcgccggcgaccaCCCCCCACCCCCACCACCACAAGAAAACCAAAACAACAACCCTGGCCGGAGGCTTAGGGTTTTGTCTAAGGTTCCGGCGGCGCTTATTGTGTTTTTGTTGGGTTTGGTGTTATGTTTCATTCGCGACCCTTCGATATTCGGAGATCTTAGGTTCGGGCCTTCGAAGATTTCGCTTGTTAAGATTAGTTGGGAGGATTTAAAAATTGGATTTGTGAGCGCCGCAATTCCACAGATTCCGTTATCCGTTTTGAATTCGGTTATTGCGGTTTGTAAGCTCTCCGGGGACTTGTTTCCGGAGCGCGAGGCTTCAGCGATGCATGTTTCGGTGAGTGTGGGACTTATGAACTTTGTGGGGTGTTGGTTCGGAGCCATGCCTTGTTGTCACGGGGCTGGTGGTTTGGCTGGACAATACAGGTTCGGGGGTAGGAGTGGTGCTTCGGTGGTGTTTCTTGGGGTTGCCAAGTTGGTTCTTGCTCTAGTGTTTGGAAACTCGCTTGGAAGAATCTTGGGTGAGTTTCCTATTGGGATTCTTGGAGTGCTTTTGTTGTTTGCGGGCATTGAGTTAGCTATGGCTGCTAGGGACATGAACACGAAGCAAGAGTCTTTTGTTATGCTTGTTTGTGCTGCTGTTTCCCTCACTGGCTCAAGTGCTGCCTTGGGATTCTTTGTTGGTATTGTGCTCTACTTGCTCCTCAAATTGAGGGAGGTTGAATGTGCTTTCGCCTTTTGCTCATCTAACAAGAACAAGTCTTCTCTTGAGGATGAGCAAGCTAGCTTAATTGCCTAG 4014 0.4118 MAAFAKPSHLHAQRDNPILPSRTTSTNFNFKTFTFFHNLLTLRKVKHVCVSSSATTTTSLSNNPNSDICKFCLLGNLDRAMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVFSHVSMSMTCLSTQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGFFDEALDLYHRMLWVGLRPDVYTFPCVLRTCGGMPNLVRGREIHVHVLRHGFESDVDVINALITMYVKCGDVNTARLVFDKMPYRDRITWNAMISGYFENGECLEGLRLFGRMIEHPVDPDLMTMTSVITACELLGDERLGRQIHGYVLRMKFGRDPSVHNSLIQMYSSVGLIEEAEMVFYHTECRDVVSWTAMISGYENSLMPQKALETYEMMAAQGIMPDEITIASALSACSCLCHLDMGMNLHEVAKQNGFVSDAIVVNTLIDMYAKCKCIDKALEVFHSAREKNIISWTSIILGLRINNRCFEALFYFREMILRLNPNSVSLICVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFSSVDHDVTAWNILLTGYAELGKGALATELFQRMVESNVSPDEVTFVSILCACSRSGMVAEGLEYFNSMEYKYSITPNLKHYACVVDLLGRSGSLEEAYEFIEKMPMKPDPAVWGALLNACRIHHDVELGELAAENIFQDDTTSVGYYILLSNLYADNNKWDKVAEVRKMMRQNGLIVDPGCSWVEVKGIVHAFLSGDNFHPQIKEINAILERFYMKMKEAGVEGPESSHMDIMEASKADIFCGHSERLAIAFALINSGPGVPIWVTKNLYMCQSCHSVVKFISTEVRREISVRDAEQFHHFKGGICSCMDEDSILPKNATIASVGDEEMSRSSSFRRNGWIPSSVRLKTTLLSELSGAVGDLGTYIPIVLALSLVNNLDLTTTLLFTSFYNIATGLLFGLPMPVQPMKSIAAVAISASPPLTIPQISAAGLSVAAVLLLLGATGLMSLLCRYLPLPVVRGVQLSQGLSFAFSAVNYIRYDQNLATSKSGPPRPWLALDGLAVALAAVVFLVLTTGAGDHPPPPPPQENQNNNPGRRLRVLSKVPAALIVFLLGLVLCFIRDPSIFGDLRFGPSKISLVKISWEDLKIGFVSAAIPQIPLSVLNSVIAVCKLSGDLFPEREASAMHVSVSVGLMNFVGCWFGAMPCCHGAGGLAGQYRFGGRSGASVVFLGVAKLVLALVFGNSLGRILGEFPIGILGVLLLFAGIELAMAARDMNTKQESFVMLVCAAVSLTGSSAALGFFVGIVLYLLLKLREVECAFAFCSSNKNKSSLEDEQASLIA 1337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00184 1337 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Cca11g00184 1337 TIGRFAM PPR: pentatricopeptide repeat domain 436 465 IPR002885 -
Cca11g00184 1337 TIGRFAM PPR: pentatricopeptide repeat domain 365 399 IPR002885 -
Cca11g00184 1337 TIGRFAM PPR: pentatricopeptide repeat domain 264 297 IPR002885 -
Cca11g00184 1337 TIGRFAM PPR: pentatricopeptide repeat domain 566 599 IPR002885 -
Cca11g00184 1337 TIGRFAM PPR: pentatricopeptide repeat domain 163 196 IPR002885 -
Cca11g00184 1337 TIGRFAM PPR: pentatricopeptide repeat domain 600 634 IPR002885 -
Cca11g00184 1337 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 14 469 - -
Cca11g00184 1337 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 558 843 - -
Cca11g00184 1337 Pfam E motif 680 742 IPR046848 -
Cca11g00184 1337 Pfam PPR repeat 466 492 IPR002885 -
Cca11g00184 1337 Pfam PPR repeat 236 259 IPR002885 -
Cca11g00184 1337 Pfam PPR repeat 336 357 IPR002885 -
Cca11g00184 1337 Pfam PPR repeat 638 662 IPR002885 -
Cca11g00184 1337 Pfam PPR repeat 437 465 IPR002885 -
Cca11g00184 1337 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 598 628 IPR002885 -
Cca11g00184 1337 Gene3D Tetratricopeptide repeat domain 212 315 IPR011990 GO:0005515
Cca11g00184 1337 Gene3D Tetratricopeptide repeat domain 415 521 IPR011990 GO:0005515
Cca11g00184 1337 Gene3D Tetratricopeptide repeat domain 318 414 IPR011990 GO:0005515
Cca11g00184 1337 Pfam PPR repeat family 161 207 IPR002885 -
Cca11g00184 1337 Pfam PPR repeat family 563 610 IPR002885 -
Cca11g00184 1337 Pfam PPR repeat family 362 409 IPR002885 -
Cca11g00184 1337 Pfam PPR repeat family 262 308 IPR002885 -
Cca11g00184 1337 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Cca11g00184 1337 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 563 597 IPR002885 -
Cca11g00184 1337 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 466 556 - -
Cca11g00184 1337 PANTHER BNAC05G11880D PROTEIN 466 556 - -
Cca11g00184 1337 PANTHER BNAC05G11880D PROTEIN 14 469 - -
Cca11g00184 1337 PANTHER BNAC05G11880D PROTEIN 558 843 - -
Cca11g00184 1337 Gene3D Tetratricopeptide repeat domain 63 211 IPR011990 GO:0005515
Cca11g00184 1337 Gene3D Tetratricopeptide repeat domain 538 753 IPR011990 GO:0005515
Cca11g00184 1337 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Cca11g00184 1337 Pfam Molybdate transporter of MFS superfamily 911 1026 IPR031563 GO:0015098|GO:0015689
Cca11g00184 1337 Pfam Molybdate transporter of MFS superfamily 1146 1264 IPR031563 GO:0015098|GO:0015689
Cca11g00184 1337 Pfam DYW family of nucleic acid deaminases 786 867 IPR032867 GO:0008270
Cca11g00184 1337 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00184 Cca-Chr11 2254551 2261355 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00184 894 1334 Inorganic Solute Cotransporters AT1G80310 67.114 1.85e-173 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00184 - - gmx:100794338 1562.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00184 11 2254551 2261355 Cca11g00184 11 2254551 2261355 ECH