Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00164 ATGGATGTCATTTGCCAAGCGAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTTTCCTCACTTCAGCAAGTTGATCCTGTTGCTGGTCAAGTTGCTGCTCTTGTTCTTTGCCACACAAGAGAACTGGCTTATCAGATTTGCCATGAGTTTGAGAGATTCAGCACATATCTTCCTGATATAAAGGCTGCTGTTTTCTATGGTGGTGTCAACATCAAGATTCACAAAGAATTGCTCAAGAATGAATGCCCACATATTGTTGTTGGAACTCCTGGGAGGATTCTTGCCCTGGCTAGAGATAAGGACCTTGGTTTAAAGAATGTGAGGCATTTTATACTTGATGAGTGTGACAAGATGCTCGAATCACTTGATATGAGAAGAGATGTGCAAGAGATTTTCAAATTGACTCCTCATGATAAACAAGTGATGATGTTTTCGGCTACACTCAGTAAAGAGATCCGACCTGTTTGCAAGAAATTTATGCAAGATCCCATGGAAATTTATGTAGACGATGAGGCCAAATTGACACTTCACGGTCTTGTGCAGCACTATATCAAATTGCAAGAGTCAGAGAAGAATCGGAAGTTGAATGATCTTCTTGATGCTCTGGACTTCAACCAAGTAGTTATTTTTGTCAAAAGTGTTAATAGAGCTGGAGAGTTGAACAAGCTGCTTGTGGAATGTAACTTCCCATCCATCTGCATACATTCTGCAATGTCACAGGAAGAGAGATTGAAACGATACAAGGGCTTCAAAGAAGGGAAGCAAAGGATTCTCGTGGCAACTGATTTAGTTGGAAGGGGGATTGACATAGAACGTGTTAATATAGTTATTAACTATGACATGCCTGATTCTGCTGATACTTACTTGCACAGGGTGGGAAGAGCTGGTAGATTTGGCACAAAGGGGCTTGCCATTACTTTTGTGTCCTCTACTTCGGACTCTGAGGTTCTTAATCAGGTGCAATCTAGGTTTGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACTTCAACATATATGCCGAATTGA 1035 0.4097 MDVICQAKSGMGKTAVFVLSSLQQVDPVAGQVAALVLCHTRELAYQICHEFERFSTYLPDIKAAVFYGGVNIKIHKELLKNECPHIVVGTPGRILALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVNRAGELNKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTSDSEVLNQVQSRFEVDIKELPEQIDTSTYMPN 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00164 344 Pfam DEAD/DEAH box helicase 2 153 IPR011545 GO:0003676|GO:0005524
Cca11g00164 344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 318 IPR027417 -
Cca11g00164 344 CDD DEADc_DDX39 1 169 - -
Cca11g00164 344 Pfam Helicase conserved C-terminal domain 193 300 IPR001650 -
Cca11g00164 344 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 1 339 - -
Cca11g00164 344 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 339 - -
Cca11g00164 344 SMART helicmild6 219 300 IPR001650 -
Cca11g00164 344 SMART ultradead3 1 183 IPR014001 -
Cca11g00164 344 Gene3D - 176 344 IPR027417 -
Cca11g00164 344 Gene3D - 1 175 IPR027417 -
Cca11g00164 344 CDD SF2_C_DEAD 180 309 - -
Cca11g00164 344 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 195 340 IPR001650 -
Cca11g00164 344 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 167 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00164 Cca-Chr11 1994406 1999037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00164 1 344 Eukaryotic Initiation Factors Gene Family AT5G11170 91.570 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00164 K12812 - gmx:100785358 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00164 11 1994406 1999037 Cca11g00164 11 1994406 1999037 ECH