Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00162 ATGGTGCAATCAAGGAAATTCAGAGGTGTGAGGCAACGCCATTGGGGCTCGTGGGTTTCTGAGATTCGTCACCCATTATTGAAAAGGAGGGTGTGGCTTGGGACATTCGAGACAGCTGAGGAAGCAGCTAGAGCATATGATGAGGCAGCCATTTTGATGAGTGGCAGAAACGCAAAGACAAACTTCCCAGTTGCTGAGAACCAAATGGGGAATCACAGTTCCAGCACTTCCTCTTCCACAACCACATTGTCTGCAGTTCTGAGTGCAAAGCTTAGGAAGTGTTGCAAGTCCCCTTCACCTTCCCTCACATGCCTAAGGCTTGACACTGAGAATTCCCACATAGGGGTGTGGCAGAAGCGTGCAGGCCCTCGTTCTGACTCAAACTGGATCATGATGGTTGAGTTGGAAAGGAAGAACAACGAGGGTGAGAGTGAGGGTCCTTCTTCTGATTCAGAATTGCCTGTGGTTGTTGATGCACCAGAGAAGGTGAAGCCTGAGGAAGGAAATGGCTTAGATGAGGAGCAGAGAATGGCACTGCAGATGATAGAGGAACTTCTGAATAGGAACTGA 570 0.4912 MVQSRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVAENQMGNHSSSTSSSTTTLSAVLSAKLRKCCKSPSPSLTCLRLDTENSHIGVWQKRAGPRSDSNWIMMVELERKNNEGESEGPSSDSELPVVVDAPEKVKPEEGNGLDEEQRMALQMIEELLNRN 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00162 189 MobiDBLite consensus disorder prediction 139 174 - -
Cca11g00162 189 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Cca11g00162 189 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Cca11g00162 189 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Cca11g00162 189 MobiDBLite consensus disorder prediction 157 174 - -
Cca11g00162 189 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Cca11g00162 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WIN1-LIKE 1 189 - -
Cca11g00162 189 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Cca11g00162 189 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 189 - -
Cca11g00162 189 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Cca11g00162 189 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Cca11g00162 189 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00162 Cca-Chr11 1973154 1974667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00162 1 189 AP2-EREBP Transcription Factor Family AT1G15360 63.184 4.22e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca11g00162 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00162 - - gmx:100796962 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00162 11 1973154 1974667 Cca11g00162 11 1973154 1974667 ECH