Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00161 ATGGCGCAAATTCTGCTTCATGGGACTCTCCACGCCACCATCTTTGAGGTCGATAAGCTCAATGCTGGTGGTGGTGGCAATTTTTTCAGCAAGCTGAAGCAAAACCTTGAGGAGACTGTTGGTATTGGAAAGGGAGTTACTAAACTCTATGCAACCATTGATTTGGAGAAGGCAAGAGTGGGAAGGACTAGAATTATAGAAAATGAACATACTAATCCCAGATGGTACGAGTCTTTTCACATTTATTGTGCCCATATGGCTTCAAATATAATATTCACCGTGAAAGATGATAATCCTATTGGGGCAACTTTAATTGGAAGAGCATATGTACCTGTTTCGGAGGTGTTGGATGGTGAGGAAATAGATAGGTGGGTTGAAATCTTGGACAATGATAAAAATCCAATACAAGAGGGTTCAAAGATCCATGTGAAGCTGCAATATTTTGATGTCACAAAAGACCGCAACTGGGCTCGAGGCATTAGAAGTCCTAAATTCCCTGGAGTTCCCTATACTTTCTACTCACAGAGGCAAGGATGTAAGGTATCTCTGTACCAAGATGCTCATGTTCCTGATAATTTTGTACCTAAAATACCTCTTGCTGGAGGCCAGACTTATGAGGCTCATAGGTGTTGGGAGGATATTTTTGATGCAATCACTGATGCAAAACACTTGGTATACATTACTGGTTGGTCTGTTTATACTGAAATTTCCTTGGTAAGGGATTCTAGGAGACCAAAGCCTGGTGGAGACCAAACACTTGGTGAGCTTCTCAAGAAAAAGGCAAGTGAAGGTGTTAAGGTTTTGATTCTTATTTGGGATGATAGAACATCAGTTAGTTTGTTGAAAAAAGATGGACTGATGGCGACTCATGATGAAGAAACCGCACAGTTCTTCAATGGCACTGATGTGCACTGTGTTTTATGCCCCCGCAATCCTGATGATGGTGGGAGCATTGTTCAGGATTTACAAATTTCTACCATGTTTACACATCATCAGAAGATTGTGGTGGTTGACAGTGCAATGCCAGGTGGAGGGTCAGATAGGCGAAGAATTGTGAGTTTCGTTGGGGGTATTGACCTCTGCGACGGAAGATATGACACTGCTTTCCACTCACTTTTCAGAACCCTTGACACGGCACACCATGATGATTTTCATCAGCCTAACTTCCCTGGTGCTGCAATCACAAAAGGTGGCCCCAGGGAACCTTGGCATGACATCCATTCCCGGCTTGAAGGACCCATAGCTTGGGATGTTCTGTTTAACTTTGAGCAGAGATGGAGAAAGCAAGGTGGGAAGGATTTACTTGTTCCACTGAGAGAGCTTGAAGATGTCATTATTCCCCCATCCCCAGTAATGTATCCTGACGATCATGAGACATGGAACGTTCAGTTGTTTAGATCTATCGATGGTGGTGCTGCTTTTGGGTTCCCGGATACTCCTGAAGATGCTGCCAGAGCTGGGCTTATTAGTGGGAAGGATAATATCATTGATCGTAGCATTCAAGATGCTTACATTAATGCTATTCGACGTGCAAAGAATTTCATCTATATTGAAAACCAGTATTTCCTTGGAAGCTCTTATGCCTGGAGTGCTGAGGGTATTAAGCCTGAAGAGATTGGTGCTTTGCATGTAATCCCAAAGGAACTTTCACTTAAGATTGTTAGTAAGATTGAAGCCGGGGAAAGGTTCACCGTATATGTTGTGGTCCCAATGTGGCCAGAGGGTGTCCCAGAAAGTGCATCAGTTCAGGCAATATTGGACTGGCAGAGGAGAACAATGGAGATGATGTACAAGGATGTTGTTCAGGCGCTGAAGGCTAAAGGACTCGATGATGATCCCCGAAACTATTTGACATTCTTCTGCCTTGGTAATCGGGAAGTCAAGAAATCGGGAGAATATGAGCCTTCTGAACAACCAGATGATGATTCAGATTATAAGAAAGCCCAAGAGGCCCGGCGTTTCATGATTTATGTTCATACCAAGATGATGATAGTTGATGACGAATACATAATCATTGGATCTGCCAACATCAACCAAAGGTCAATGGATGGTTCTAGGGACTCTGAGATTGCCATGGGTGCTTATCAGCCCTATCATTTGGCTAACAGACAGCCGGCGCGAGGCCAGATCCACGGTTTCCGCATGTCATTGTGGTATGAGCATCTTGGCATGCTTCATGACTCCTTCCTCAGGCCAGAAAGTGAAGAATGCATTAGTAAGGTGAACCAGATTGCTGACAAATATTGGGATCTGTATTCTAATGAGTCACTTGAGCATGACCTTCCTGGTCATCTGCTCCGCTACCCGATTGGCGTTGCCAGCGAAGGAGATGTCACTGAGCTGCCAGGATTTGAATTCTTCCCTGACACCAAGGCTCGCATTCTTGGTGCCAAAGCTGACTACATGCCCCCTATCCTCACCACTTAG 2427 0.4433 MAQILLHGTLHATIFEVDKLNAGGGGNFFSKLKQNLEETVGIGKGVTKLYATIDLEKARVGRTRIIENEHTNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVSEVLDGEEIDRWVEILDNDKNPIQEGSKIHVKLQYFDVTKDRNWARGIRSPKFPGVPYTFYSQRQGCKVSLYQDAHVPDNFVPKIPLAGGQTYEAHRCWEDIFDAITDAKHLVYITGWSVYTEISLVRDSRRPKPGGDQTLGELLKKKASEGVKVLILIWDDRTSVSLLKKDGLMATHDEETAQFFNGTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSAMPGGGSDRRRIVSFVGGIDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVPLRELEDVIIPPSPVMYPDDHETWNVQLFRSIDGGAAFGFPDTPEDAARAGLISGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYAWSAEGIKPEEIGALHVIPKELSLKIVSKIEAGERFTVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYKDVVQALKAKGLDDDPRNYLTFFCLGNREVKKSGEYEPSEQPDDDSDYKKAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGSRDSEIAMGAYQPYHLANRQPARGQIHGFRMSLWYEHLGMLHDSFLRPESEECISKVNQIADKYWDLYSNESLEHDLPGHLLRYPIGVASEGDVTELPGFEFFPDTKARILGAKADYMPPILTT 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00161 808 PIRSF PLD_plant 1 808 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cca11g00161 808 SMART C2_3c 9 124 IPR000008 -
Cca11g00161 808 SMART pld_4 654 681 IPR001736 GO:0003824
Cca11g00161 808 SMART pld_4 326 364 IPR001736 GO:0003824
Cca11g00161 808 Pfam Phospholipase D Active site motif 326 364 IPR001736 GO:0003824
Cca11g00161 808 Pfam Phospholipase D Active site motif 655 681 IPR001736 GO:0003824
Cca11g00161 808 PANTHER PHOSPHOLIPASE D 2 808 IPR015679 -
Cca11g00161 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 654 681 IPR001736 GO:0003824
Cca11g00161 808 Gene3D Endonuclease Chain A 199 440 - -
Cca11g00161 808 SUPERFAMILY Phospholipase D/nuclease 444 738 - -
Cca11g00161 808 PANTHER PHOSPHOLIPASE D ALPHA 1 2 808 - -
Cca11g00161 808 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Cca11g00161 808 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 150 IPR035892 -
Cca11g00161 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 364 IPR001736 GO:0003824
Cca11g00161 808 SUPERFAMILY Phospholipase D/nuclease 151 446 - -
Cca11g00161 808 CDD PLDc_pPLDalpha_2 492 701 - -
Cca11g00161 808 Pfam C2 domain 10 127 IPR000008 -
Cca11g00161 808 Pfam Phospholipase D C terminal 727 798 IPR024632 -
Cca11g00161 808 Gene3D Endonuclease Chain A 478 699 - -
Cca11g00161 808 Gene3D C2 domain 7 158 IPR035892 -
Cca11g00161 808 CDD C2_plant_PLD 2 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00161 Cca-Chr11 1947199 1952123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00161 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 82.346 0.0 1428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00161 K01115 - gmx:100786410 1592.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00161 11 1947199 1952123 Cca10g00100 10 1045368 1051005 ECH
Cca11g00161 11 1947199 1952123 Cca11g00161 11 1947199 1952123 ECH
Cca10g00099 10 1034953 1040690 Cca11g00161 11 1947199 1952123 PCT