Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00149 ATGGGCCGTGAAAGAATAACTTTGAAACCTATTAAAAGTGAAAGAGCTCGGAGGACAACTTTGGTGCAGAGAAAGAAAGGACTAATGAAAAAACTTGCCGAGTTTTCGACCTTGTGTAGAGCTAAAGCGTGCTTGATTGTGTATGATGATGCCGATGGTGATGCTGCACCAGTCACTTGGCCCCAAGACCCCACAATGGTGCGTTCCATCATTGAAAACTACGAGCATCAAAAGAAAGTAAGAACTCCCAAGATCTTTGAAATTCAAGACTTCTTTGATAATAGGAAGAACATGGTTGAGACCGAGATTTCCAAAGTGCACAAAAAGATCAAAAACATCGAGTATCCAACTTGGGATCCTCGTTTCAAAAACATGGGAGCTGAGCAATTGAATGCTTTCATTTCTTTAGTGGACGCCAAGATTGCAGCTTGTGATCATAAAATCAACATGGCAAGAAACATGCATCAAAGTGAAGGCAACTTTAGTTTCATGCCAAACATGGGTCATGCAAGTGCTTCCTCCTCTCACCCAAGCCAACTCAATTTCATGCACAACATTTCTCAAAGCCAAGCCATCTCGATGGAGCAACTACTTAATGATAATAATGGGAGGGTGGATTTTGCAAATACAACTAATCAGGTTGCTGAAGGTACTGATCATGGAATTAATAACATATTCAGAAACATGCAACATGGTGATGTTTGCTTTAATTACACGCCAAGCATGGTTCAGGAAAGAGGTACCTCCTCACATGTAAGTCAATCAAATTTCTTGCAAAACAACTCTAGAGATCAATTTACAGTTGAAGTTTTGAAGAGAATCACGGAAAGAAATGAGATGGTAAATTTTACTAATGAAGTTTATATTCCTCAAGTTCCTCAAGATTCAACTTATCAAGTAGGGGAGTCTTTGGACTGGTCTAATAAGGTTGGTGACTTGGCCAATTTGGTTAATGGACCCATTGTGATTGATGATTGGTCTAGTCAACTAAGTGGTGATTTAGTGGATTGGGCCACTCGGCCCAATGAATCTACCTTGCAGAATCTTCCTGTTCAATCTCAGAATGACCAAAATGAAGTGACATTGCCTGCCTTGCCACCAACATTGGATGAATTTCAAACAGATTATTATCAATAG 1137 0.3984 MGRERITLKPIKSERARRTTLVQRKKGLMKKLAEFSTLCRAKACLIVYDDADGDAAPVTWPQDPTMVRSIIENYEHQKKVRTPKIFEIQDFFDNRKNMVETEISKVHKKIKNIEYPTWDPRFKNMGAEQLNAFISLVDAKIAACDHKINMARNMHQSEGNFSFMPNMGHASASSSHPSQLNFMHNISQSQAISMEQLLNDNNGRVDFANTTNQVAEGTDHGINNIFRNMQHGDVCFNYTPSMVQERGTSSHVSQSNFLQNNSRDQFTVEVLKRITERNEMVNFTNEVYIPQVPQDSTYQVGESLDWSNKVGDLANLVNGPIVIDDWSSQLSGDLVDWATRPNESTLQNLPVQSQNDQNEVTLPALPPTLDEFQTDYYQ 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00149 378 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Cca11g00149 378 PANTHER PROTEIN, PUTATIVE-RELATED 3 303 - -
Cca11g00149 378 SUPERFAMILY SRF-like 1 79 IPR036879 GO:0003677|GO:0046983
Cca11g00149 378 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Cca11g00149 378 PANTHER MADS BOX PROTEIN 3 303 - -
Cca11g00149 378 CDD MADS_SRF_like 2 79 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cca11g00149 378 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Cca11g00149 378 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca11g00149 378 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca11g00149 378 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca11g00149 378 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00149 Cca-Chr11 1860292 1861613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00149 1 141 Type I MADS-box Gene Family AT5G55690 33.793 4.18e-18 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca11g00149 SRF-TF 6.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00149 - - ccaj:109809010 770.77