Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00144 ATGGCCTTTTGGTTTTGCTGCGGAAAATCTTCTTGTCGAAGGCGAGGGAAAAAACATCCTACTTGGAGGGTGTTTTCTTTGAAGGAATTACACGCTGCTACAAATAATTTCAACTATGATAACAAGCTTGGAGAAGGGGGATTTGGCAGTGTGTACTGGGGTCAACTATGGGATGGGTCTCAAATTGCGGTGAAAAGATTGAAAGTTTGGAGCAACAGAGCAGAGACAGAATTCACCATGGAACTTGAAATATTGGCACAAATACGACACAAGAATCTTCTGAGCCTTCGTGGGTACTGTGTTGAAGGACAAGAACGGTTAATTGTATACGAATACATGCCAAATTTGAGCCTTCACTCTCATCTTCATGGACACCACTCATTCGAATGCGTTCTTGACTGGAATCGGCGGATGAACATTGCAATTGGATCTGCTGAGGGAATTGTATACCTTCACCACCAAGCAACACCTCAGATCATCCACAGAGACATTAAAGCAAGCAACGTGTTGCTGGATTCTGATTTTAAAGCCCGAGTTGCTGATTTCGGATTTGCCAAGTTGATCCCTGACAGTGCAACGCTTGTGACCACAAAATTTAAGGGCACCCTTGGCTACCTTGCACCAGAATATGCTATGCTAGACAAAGCTACTGAGAGTTGTGATGTCTACAGTTTTGGCATCCTCCTTCTTGAACTCGCTAGTGGCAGAAGACCAATCGAAAAGCTTAGTTCCTCAGTGAGGCGATCGATAGTTGATTGGGCATTGCCATTGGTTTGTGAGAAGAAATTTGGTGAAATTGCTGACCCAAGACTAAAGGGTAAGTATGTGGAGGGAGAGCTTAAGAGAGTTGTTTTAGTTGCACTTATGTGTGCTCAAGATCTTCCTGAAAAGAGACCAACCATGCTTGATGTAGTGGAACTACTCAAGGGAGAATCTAAGGATAAATTTTCTCATATAGAGAAGAGTGACATGTTCAGAAGCGTCCTAGCTGTAGAAAGCAGTGGTGGGACATCAGTGACTGAAGACAGTTTGGACTATATCTCAGAAGAAAAAGAAATGGAACGTCCCTTGAAAGAGAATAATGAACTATGA 1092 0.4295 MAFWFCCGKSSCRRRGKKHPTWRVFSLKELHAATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNRAETEFTMELEILAQIRHKNLLSLRGYCVEGQERLIVYEYMPNLSLHSHLHGHHSFECVLDWNRRMNIAIGSAEGIVYLHHQATPQIIHRDIKASNVLLDSDFKARVADFGFAKLIPDSATLVTTKFKGTLGYLAPEYAMLDKATESCDVYSFGILLLELASGRRPIEKLSSSVRRSIVDWALPLVCEKKFGEIADPRLKGKYVEGELKRVVLVALMCAQDLPEKRPTMLDVVELLKGESKDKFSHIEKSDMFRSVLAVESSGGTSVTEDSLDYISEEKEMERPLKENNEL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00144 363 PANTHER BNAA05G14800D PROTEIN 4 359 - -
Cca11g00144 363 Gene3D Transferase(Phosphotransferase) domain 1 113 326 - -
Cca11g00144 363 ProSitePatterns Protein kinases ATP-binding region signature. 43 65 IPR017441 GO:0005524
Cca11g00144 363 PIRSF TyrPK_CSF1-R 34 139 - -
Cca11g00144 363 PIRSF TyrPK_CSF1-R 125 243 - -
Cca11g00144 363 PIRSF TyrPK_CSF1-R 281 363 - -
Cca11g00144 363 MobiDBLite consensus disorder prediction 334 363 - -
Cca11g00144 363 SUPERFAMILY Protein kinase-like (PK-like) 18 308 IPR011009 -
Cca11g00144 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Cca11g00144 363 Pfam Protein kinase domain 38 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00144 363 SMART serkin_6 37 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00144 363 PANTHER OS01G0750732 PROTEIN 4 359 - -
Cca11g00144 363 MobiDBLite consensus disorder prediction 344 363 - -
Cca11g00144 363 Gene3D Phosphorylase Kinase; domain 1 9 112 - -
Cca11g00144 363 ProSiteProfiles Protein kinase domain profile. 37 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00144 Cca-Chr11 1776966 1780535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00144 25 311 Trihelix Transcription Factor Family AT1G70460 48.454 7.37e-90 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Cca11g00144 Pkinase 3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00144 - - gmx:100791193 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00144 11 1776966 1780535 Cca11g00144 11 1776966 1780535 ECH
Cca10g00089 10 965073 968515 Cca11g00144 11 1776966 1780535 PCT