Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00121 ATGGAGGAGGAGTCGGGGGAAAATTGGCCTTGTGATTCTTATTTGGAAGTGGGTGATGACGTCAACGAGTTCAGTTTTGATGATGAAGAATTTGGCTTTGGTGGTGGTGATGATGAGGGAGATTCTTTTTCTGAGACCATAGATCCCAAGATGACCGACACAAAGAAGAGACAACAAGAACTCACTAAGAGGTTTCTTGCACTTTCAGCCACCATACCTGGCTTCAAAAAGATGGACAAGACTTCCATTCTGGACAAAGCTAGCAGCTACGTTAGACAGCTTGAGCAACGTGTGAGAGAGTTAGAGCAAGAAGTTCAATCCAACATTTGCAGCAATAACAATGGTTCCACCACCTCTAATGAAGTGAATTCTAACTACCATTACAGTGAAGCAAATGAAATTTCCCCCGAAGTCAAAGTAAGAGTGTTACAGAAGGACGTACTCATCATAATCCACTGTGAGAAACAAAAGGGCATCATGCTCAAAGTTCTCTCATACCTTGAAAATATTAATCTCTCTGTAGTCAACAGCAGCGTCTTGCGCTTTGGAAAATCCACTCTCGACATCACCATCACTGCTCAGATGGGTGATGGATACAAGATGTCAGTGGATGAACTAGTGAAGACCTTGAGAGTAGCAATCTTGACTCAGTAG 654 0.4281 MEEESGENWPCDSYLEVGDDVNEFSFDDEEFGFGGGDDEGDSFSETIDPKMTDTKKRQQELTKRFLALSATIPGFKKMDKTSILDKASSYVRQLEQRVRELEQEVQSNICSNNNGSTTSNEVNSNYHYSEANEISPEVKVRVLQKDVLIIIHCEKQKGIMLKVLSYLENINLSVVNSSVLRFGKSTLDITITAQMGDGYKMSVDELVKTLRVAILTQ 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00121 217 Coils Coil 84 111 - -
Cca11g00121 217 MobiDBLite consensus disorder prediction 26 53 - -
Cca11g00121 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 112 IPR036638 GO:0046983
Cca11g00121 217 PANTHER PROTEIN, PUTATIVE-RELATED 45 217 - -
Cca11g00121 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
Cca11g00121 217 SMART finulus 51 100 IPR011598 GO:0046983
Cca11g00121 217 PANTHER BHLH TRANSCRIPTION FACTOR 45 217 - -
Cca11g00121 217 Gene3D - 54 109 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00121 Cca-Chr11 1427747 1433769 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00121 55 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 39.779 7.00e-32 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00121 - - vra:106773517 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00059 10 719815 722082 Cca11g00121 11 1427747 1433769 PCT
Cca11g00121 11 1427747 1433769 Cca10g00058 10 702008 704217 PCT