Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00120 ATGCTCTCATTACTTCCTGATATGGAGGACTCATGGGAAAACTGGCTCGCTCATTTGGGAATGAATGATGATTCTGCCTGCACCAACGCCACTATAGCAGCTATCGGGCCAAAAGAAGAATGTTATAACTCTTATTTGAAGAGCAGAGAAGAGGAATCAGGAAGTTGCTATGAGTTGGAGTTGGAGGGAAGGGAGAAGAGTAGAGGAACAAAAAGGGCAAGAAGCTCTTATGAGACACAATATCATATAATGTCAGAGAGAAAAAGGAGACAGGATATAGCGCAGAAATTCATAGCACTCTCAGCTACTATACCTGGCTTGAAGAAGATCAACAAGGCCTCTGTGCTCGGGGAAGCCATCAACTACATGCGACAACTTCAACAACGAATAGCAATGCTGGAAAAAGGGATTAACAATAACCTAAGTATGAAGTCATTGATCATCACGAAATCGTGTGAAACAAACTTATGTACTTATTATAGAGCCAATGAAGTGCTCCCTGAAGTTGAAGCAAGAGGTTTAGAGAAGGAAATACTGATTAGAATCTATTGTGAGAAACGAAAGGGCATCATGATTAAGCTATTGGCCCTACTAAAACAGGTTCATCTCTCAATAGCCTATAGCACCGTATTGCCATTTGGAAACTCTTTTCTCAACATCATCATAATTGCTCAGATGAGTGAGAAATACAAGTTGAGTGTGAAGGATTTGGTTATGACCTTGAAGCAGGGCTTTTGA 738 0.4079 MLSLLPDMEDSWENWLAHLGMNDDSACTNATIAAIGPKEECYNSYLKSREEESGSCYELELEGREKSRGTKRARSSYETQYHIMSERKRRQDIAQKFIALSATIPGLKKINKASVLGEAINYMRQLQQRIAMLEKGINNNLSMKSLIITKSCETNLCTYYRANEVLPEVEARGLEKEILIRIYCEKRKGIMIKLLALLKQVHLSIAYSTVLPFGNSFLNIIIIAQMSEKYKLSVKDLVMTLKQGF 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00120 245 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 13 245 - -
Cca11g00120 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 126 IPR011598 GO:0046983
Cca11g00120 245 SMART finulus 83 132 IPR011598 GO:0046983
Cca11g00120 245 Gene3D - 66 141 IPR036638 GO:0046983
Cca11g00120 245 Pfam Helix-loop-helix DNA-binding domain 81 127 IPR011598 GO:0046983
Cca11g00120 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 138 IPR036638 GO:0046983
Cca11g00120 245 PANTHER BHLH TRANSCRIPTION FACTOR 13 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00120 Cca-Chr11 1396910 1404191 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00120 68 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 40.000 5.79e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g00120 HLH 5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00120 - - ccaj:114915550 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00058 10 702008 704217 Cca11g00120 11 1396910 1404191 PCT