Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00116 ATGGGGGAGCCATGCCAAAAATATTGGTTCTCTGATATGGAAGTTCAAGATTATGATTTCTACCAAAACTACAAGATTGACTCACTTGATTATGAGGATCAGATCTTTCGAGAGATCATGCTTCAGCCAGCTTTCTCTTCTGACAGCAAAACTCACTCTCCCAATAATAAAAAATTATCACCAATCCACAGTGGCAGTGGTTCTTGTACAAGTACAACCCTTGCCATCAACAACAAAAGTAGCAACCTTGTGATCAAGAGCAACAACCAGTCCAACCTCATCTTCTCACAACATGCACTAGAAAAACCTGCCATAGCCACTTCTCCAACATCATACATTCTGTCCTTCGATGACTCCTCCGTAGTAGCAGCTAGCGGTGGAAAACAGAAGGAAGCAGTAGGGAGTGGTGGTCTTCCCTCAAAAGGGGTCTCAGAAAAACATGGCATTGAACCTAAGGCTAACACAACAACGAGGAGAGGTAGAAGCTCTGAGGAGACGCTGAATCATATCATGACAGAGAGAAAAAGGAGACGCGAACTGACAGAGAGATTCATTGAACTTTCAGCCACCATACCTGGCTTGAAGAAGATAGACAAGGCCACAATACTTAGCGAAGCAATCACTCATGTGAAACGACTTAAAGAACGTGTAAGAGAGCTGGAAGAAAAGTGTAAACGGACAAAGGTAGAGTCAGTGTCATTTGTTCATCCAAGATCCCTCATTGCAACTGACATAGGCACCACCTCTGGTGAAATGGACTCTGATGAATGCTATAAAACAAAAGAAGCACTACCTACGGTGGAAGCAAGAGTGTTCAAAAAAGATGTACTCCTCCGGATTCACTGCAAAATACAAAGTGGCATTTTGATAAAAATTTTGGACCATCTTAACAGTCTCGACCTCTGCACAACCAGCAACAATGTAATGCCATTTGGGAGTTCAACTCTTGACATCAGCATTATTGCTCAGATGGGTGACAAATTCAGCGTAACAATGAATGATCTAGTGAAAAACCTGAGACTGGCTATCTTGCAGTCATCTGAAGTTCAACAGTGA 1056 0.4252 MGEPCQKYWFSDMEVQDYDFYQNYKIDSLDYEDQIFREIMLQPAFSSDSKTHSPNNKKLSPIHSGSGSCTSTTLAINNKSSNLVIKSNNQSNLIFSQHALEKPAIATSPTSYILSFDDSSVVAASGGKQKEAVGSGGLPSKGVSEKHGIEPKANTTTRRGRSSEETLNHIMTERKRRRELTERFIELSATIPGLKKIDKATILSEAITHVKRLKERVRELEEKCKRTKVESVSFVHPRSLIATDIGTTSGEMDSDECYKTKEALPTVEARVFKKDVLLRIHCKIQSGILIKILDHLNSLDLCTTSNNVMPFGSSTLDISIIAQMGDKFSVTMNDLVKNLRLAILQSSEVQQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00116 351 MobiDBLite consensus disorder prediction 145 165 - -
Cca11g00116 351 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Cca11g00116 351 Pfam Helix-loop-helix DNA-binding domain 168 213 IPR011598 GO:0046983
Cca11g00116 351 PANTHER BHLH TRANSCRIPTION FACTOR 6 345 - -
Cca11g00116 351 Gene3D - 155 230 IPR036638 GO:0046983
Cca11g00116 351 PANTHER TRANSCRIPTION FACTOR NAI1 6 345 - -
Cca11g00116 351 Coils Coil 203 230 - -
Cca11g00116 351 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 234 IPR036638 GO:0046983
Cca11g00116 351 MobiDBLite consensus disorder prediction 127 165 - -
Cca11g00116 351 MobiDBLite consensus disorder prediction 46 65 - -
Cca11g00116 351 SMART finulus 170 219 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00116 Cca-Chr11 1320546 1323260 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00116 103 343 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 36.364 3.85e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g00116 HLH 4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00116 - - gmx:100777846 463.381