Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00115 ATGGAGGAGGAGTCTTTCTCATACTCATACTCATGGGAGAATTGGGATCTTCATATGGAAATGGATTACAACGACGACGACGAGGAGTTTCTGAGAGACATCCTTCAGCAACCAGCCTTCGATGACTCCAAAGTGTCTGAAAATGATTCCAAAACGCCTCGTCGTTTTGCTTCTTCTCCCCAGACATTCATTCTGTCCTTCGATGACTCCACCATGGTACCGGCCACACCCGAACCCTCTTCGAATAACTCTACAACTTTACCTGCCAAACGGGCCTTGGGCCCAGAAGCGGTAGCAAGGCCCAATCAAGGAGCTAAGAAGGTTAGAAGCTCTTCTCAGACGGTGGATCACATAATGGCCGAGAGAAGAAGGAGACAAGAACTAACAGAGAGGTTCATAGCACTTTCAGCCACGATTCCCGGCTTGAACAAGACAGACAAGGCCTCGGTACTGCGAGCAGCAATAGATTATGTGAAAGAACTCAAAGAACAAATTCAGGAACTCGAAAAACAAGACAAAACAAGGAGCTTGCTGAAGAAACGGGATCCATCTAATATTCCCGAGATAGAAGCAAGAGTGTTGGGAAAGGAAGTGCTCATTGAGATTCACTGTGAGAAACAAAATGGTATTCAGTTTATATTATTGGACCACCTTGAAAATCTTCATCTCACTGTCACCGCTAGCAGTGTCTTACCATTTGGAAATTCTGCTCTAAGCATTACCATCACAGCTCAGATGGGTGAGGCGTACAAGATGACGGTGGATGATCTAGTGAAAAACATCAGACAAGTGCTCCCAGACTCGCATGTGCTCAGCGACAGTGATCCGTACTAG 834 0.4604 MEEESFSYSYSWENWDLHMEMDYNDDDEEFLRDILQQPAFDDSKVSENDSKTPRRFASSPQTFILSFDDSTMVPATPEPSSNNSTTLPAKRALGPEAVARPNQGAKKVRSSSQTVDHIMAERRRRQELTERFIALSATIPGLNKTDKASVLRAAIDYVKELKEQIQELEKQDKTRSLLKKRDPSNIPEIEARVLGKEVLIEIHCEKQNGIQFILLDHLENLHLTVTASSVLPFGNSALSITITAQMGEAYKMTVDDLVKNIRQVLPDSHVLSDSDPY 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00115 277 Gene3D - 110 183 IPR036638 GO:0046983
Cca11g00115 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 161 IPR011598 GO:0046983
Cca11g00115 277 PANTHER BHLH TRANSCRIPTION FACTOR 11 270 - -
Cca11g00115 277 SMART finulus 118 167 IPR011598 GO:0046983
Cca11g00115 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 110 172 IPR036638 GO:0046983
Cca11g00115 277 Pfam Helix-loop-helix DNA-binding domain 116 161 IPR011598 GO:0046983
Cca11g00115 277 Coils Coil 151 181 - -
Cca11g00115 277 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 11 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00115 Cca-Chr11 1290600 1292432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00115 64 265 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.583 1.85e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g00115 HLH 3.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00115 - - gmx:100778376 348.591