Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00114 ATGAACGGCGAAGTCTTCTTACACGCGGTCGCAACCACCGCCACCGCCACCACTAACTTTTCTCTTCCCAAGCCCGAAACGGCGTCGTCGGAGTCGCTCGAAGGAATCGCCGCGGTGGTGGGAGAACGCGTCCTCTTCGGTCCCCCGCACCGCGCAACAACGCCGGAGCCGAAGAAGAGCGGCGGCGCGCCGGCGAGCAAGAGCTACCGAGGAGTGAGGAAGAGGCCGTGGGGGCGGTGGTCGGCGGAGATCCGCGACCGTATCGGGCGGTGCCGGCACTGGCTGGGGACGTTCGACACGGCGGAGGAGGCGGCGCGTGCGTACGACGCGGCGGCGCGGCGACTGAGAGGCGCGAAGGCGCGTACGAACTTCAAGATTCCGTCGGTGTTGCCGCTATTGGCTTCGGAAGGGGTTAGTGGTGGTTCCGTGAAGGCGAAAAGTGGTCGCAGTAACGCGAGGAAGTGTTCCTCTGTGGAACAATTGTTCAGTGTGGTGCCTCAGCTTCAAAGAGATAATAACAACAATGGTGTTGTTGAGAATGGGAGTGTGGAGGTTGATTTGAAGCTTGGTGTGAATGTTAACTTTGGCGTTACGAGTGCTAGAATGGTGGTTTAG 615 0.6033 MNGEVFLHAVATTATATTNFSLPKPETASSESLEGIAAVVGERVLFGPPHRATTPEPKKSGGAPASKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGAKARTNFKIPSVLPLLASEGVSGGSVKAKSGRSNARKCSSVEQLFSVVPQLQRDNNNNGVVENGSVEVDLKLGVNVNFGVTSARMVV 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00114 204 MobiDBLite consensus disorder prediction 47 72 - -
Cca11g00114 204 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Cca11g00114 204 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700|GO:0006355
Cca11g00114 204 ProSiteProfiles AP2/ERF domain profile. 68 125 IPR001471 GO:0003700|GO:0006355
Cca11g00114 204 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 181 - -
Cca11g00114 204 Gene3D AP2/ERF domain 67 126 IPR036955 GO:0003700|GO:0006355
Cca11g00114 204 CDD AP2 67 126 IPR001471 GO:0003700|GO:0006355
Cca11g00114 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF084 20 181 - -
Cca11g00114 204 SMART rav1_2 68 131 IPR001471 GO:0003700|GO:0006355
Cca11g00114 204 Coils Coil 101 121 - -
Cca11g00114 204 Pfam AP2 domain 68 117 IPR001471 GO:0003700|GO:0006355
Cca11g00114 204 SUPERFAMILY DNA-binding domain 68 125 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00114 Cca-Chr11 1276672 1277449 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00114 15 131 AP2-EREBP Transcription Factor Family AT1G80580 57.971 3.09e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca11g00114 AP2 2.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00114 - - gmx:102660200 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00114 11 1276672 1277449 Cca11g00114 11 1276672 1277449 ECH