Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00112 ATGGCAGCTTCTACAGCGACCACGGTATGCGTAACTGGTGCGGGAGGCTTTGTAGCGTCTTGGCTCGTTAAGCTTCTTCTCTCCAAAGGTTACATTGTCCATGGAACAATAAGACAACCTGGTTCCCAGAAATATGAACACTTGCTGAAACTCGAGAGAGCTTCTGAGAACCTCACACTCTTCAAGGCAGATCTCTTGAATTACGAATCTCTTGGCTCTGCAATTCTCGGATGCACTGCAGTTTTCCATGTTGCTAGCCCTGTACCCTCAATAGTCGTACCCGACCCTCAGGTAGAAGTGATTGAGCCTGCTGTGAAAGGAACCACTAATGTACTTGAAGCTTGCCTTGAAGCTAAAGTGCAACGAGTTATCCTTGTATCTTCTGCAGGTGCTGTTTGCATAAACCCGAATTTGCCTAAAGATAAAGTGATTGATGAGTCCTATTGGTCTGATAAAGATTACTGCAGAAGAACTAAGAACTGGTACTGTTTTTCCAAGACAGAGGCAGAGGAGCATGCCCTAGAATTTGGAAAAAGAAGTGGGCTTGATGTGGTAAGAATTTGTCCTACCCTTGTGTTGGGGCCGATTTTACAGTCAACCACTGTCAATGCAAGTAGCTTGGTTCTGCTCAAACTTTTAAAAGGTTGTGATTCAATGGAGAATAAGATTCGTTGGATAATCGATGTACGGGATCTAGTTGATGCAATACTTTTGATTTATGAGAAGCGTGAGGCAGAAGGAAGATACGTATGCAGTTCATATACCATCAAGACACGAGATTTGGTGGAGAAACTAAAGAGTATATATCCCAACTACAAGTATCCTGCAAACTTTACTGAGGTGGATGATTACGTAAGTTTCAGCACAGAGAAACTGCAAAGGTTGGGTTGGAAATACAGGCCGCTAGAGGAAACACTCGTTGATTCTGTTGAAAGCTATAAGGAGGCTGGGCTCCTGCAATCAGAATGA 969 0.4355 MAASTATTVCVTGAGGFVASWLVKLLLSKGYIVHGTIRQPGSQKYEHLLKLERASENLTLFKADLLNYESLGSAILGCTAVFHVASPVPSIVVPDPQVEVIEPAVKGTTNVLEACLEAKVQRVILVSSAGAVCINPNLPKDKVIDESYWSDKDYCRRTKNWYCFSKTEAEEHALEFGKRSGLDVVRICPTLVLGPILQSTTVNASSLVLLKLLKGCDSMENKIRWIIDVRDLVDAILLIYEKREAEGRYVCSSYTIKTRDLVEKLKSIYPNYKYPANFTEVDDYVSFSTEKLQRLGWKYRPLEETLVDSVESYKEAGLLQSE 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00112 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 314 IPR036291 -
Cca11g00112 322 Pfam NAD dependent epimerase/dehydratase family 9 245 IPR001509 -
Cca11g00112 322 Gene3D - 1 322 - -
Cca11g00112 322 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 7 319 - -
Cca11g00112 322 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 7 319 - -
Cca11g00112 322 CDD FR_SDR_e 9 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00112 Cca-Chr11 1232087 1236040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00112 1 319 Monolignol Biosynthesis Gene Families AT2G33590 59.375 4.83e-140 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00112 - - gmx:100784817 530.406