Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00105 ATGGCCAGACCCCAACAACGCTATCGTGGAGTCCGCCAAAGGCACTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTTTATTGAAGACTAGAATATGGCTAGGAACATTTGAAACTGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCTAGACTCATGTGTGGGCCAAAAGCACGTACCAATTTCACATACAACCCTAATGAACCACATTCATCCTCATCGAAGCTTCTCTCTGCCACTTTAACGGCCAAACTACATAAGTGTCACATGGCTTCCCTTTCCCTTCAAATGGCCAAACAGAAAACCCCACAGAACAAAGAGCCTCAACCCTCCCTTGGATCCAATCCATTTGCCTCTGCCAATGCCATTGCTGGATCAAGTGCTGACACTGGATTAAGGTGGCTAGATGGGAATTGGGTTGGTGTGGAAGGCCAGGTTGAAGTTTCCCATCAACAGTTTCAGCCAGTTCTGGAAGATGATCACATTGAGCAAATGATACAAGAGTTGCTTGATTATGGATCAATTGAGCTTTGCTCTGTTGGCTCAACTTAG 555 0.4685 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFTYNPNEPHSSSSKLLSATLTAKLHKCHMASLSLQMAKQKTPQNKEPQPSLGSNPFASANAIAGSSADTGLRWLDGNWVGVEGQVEVSHQQFQPVLEDDHIEQMIQELLDYGSIELCSVGST 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00105 184 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Cca11g00105 184 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Cca11g00105 184 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Cca11g00105 184 PANTHER ETHYLENE RESPONSE FACTOR 1 180 - -
Cca11g00105 184 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Cca11g00105 184 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 180 - -
Cca11g00105 184 MobiDBLite consensus disorder prediction 98 121 - -
Cca11g00105 184 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cca11g00105 184 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cca11g00105 184 CDD AP2 6 63 IPR001471 GO:0003700|GO:0006355
Cca11g00105 184 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00105 Cca-Chr11 1174438 1175867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00105 1 181 AP2-EREBP Transcription Factor Family AT5G25190 65.217 1.32e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca11g00105 AP2 7.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00105 - - gmx:100777851 333.954