Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00099 ATGGATCTTCAAAGGCAAGAGCCATGCCCTTCCATGGTCACTCAAACAGAAAAGGAGGGTCACAAACAACCACATGACTCAGTTCCTCGTTTTTTACTAGATCTAAGTCTCTCCACCAAGGACTCAGGTGACGACTCAAAGCCAGAACTCAATCTCCTCAATTGTTTCCATGCAAATTTCTCTGAAAATTCCTCCGAATCTAGCCATGAAAATGAACTGGATCCCAGGGTTTTCTCATGCAACTACTGCCAAAGAAAGTTCTATAGTTCTCAGGCACTAGGGGGACACCAGAATGCACACAAACGTGAAAGAACTTTGGCAAGAAGAGGATACAAAGCTGGTGCAGCAGATTTTGGACACACATACTCCAACATGCCTTTTCTGCCTTCACATGGCTTATACAACAAAGCACTTGGAATTCAGGTTCATTCTATGATTAACAAACCTTCTTTTCAAACACCCTTTTTTGGGCGGTGCCGTTCCAATGGATGTCAGAGGCAGCCTTTGGATTCACAACCGGCAATAGGGAATTTTCGTGTGGGGGCAGAAACTGAGTCATCCTTGGTTGATAGTGTTCCAAAGTTAGGCAAGTTTTCAACAAGGTTGGTGACGGAGGGTTTTGGAGGTTACTGCTTTGGTAGCATTACTCATTTGAAGTCTAAGCAAGAGAAGTTGCAGAAGCTGGACTTGTCCCTCAAGCTCTAA 705 0.4426 MDLQRQEPCPSMVTQTEKEGHKQPHDSVPRFLLDLSLSTKDSGDDSKPELNLLNCFHANFSENSSESSHENELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKAGAADFGHTYSNMPFLPSHGLYNKALGIQVHSMINKPSFQTPFFGRCRSNGCQRQPLDSQPAIGNFRVGAETESSLVDSVPKLGKFSTRLVTEGFGGYCFGSITHLKSKQEKLQKLDLSLKL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00099 234 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Cca11g00099 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Cca11g00099 234 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 4 234 IPR044246 GO:0009788
Cca11g00099 234 Gene3D Classic Zinc Finger 56 117 - -
Cca11g00099 234 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 234 - -
Cca11g00099 234 SUPERFAMILY beta-beta-alpha zinc fingers 75 105 IPR036236 -
Cca11g00099 234 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00099 Cca-Chr11 1118370 1119074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00099 13 234 C2H2 Transcription Factor Family AT5G10970 41.322 2.84e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca11g00099 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00099 - - gmx:100816861 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00099 11 1118370 1119074 Cca11g00099 11 1118370 1119074 ECH