Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00092 ATGTTGAACACCCTATATGCTCCTCCAAGTGTATCTCGGGTTATGGTCGAGAGTAGCATAAAGGAAATCGTTATTAGGAAAATCGTTTACTTCCAAGCCCCGTCCTCAGCAACTGGTTTCGACACAATCGTCTTCAGGAGCAGGAAGGAGAGTTGTTTTTCTAGATCAACAAGGAAAATGTCGGGGGAAGAACCTGCCGTTGTTGCAGCCGAGTCAGCTGCCACGATTCCAGGCGAGCCAATGGATATCATGACTGCCTTACAACTTGTCCTCAGAAAATCTCTGGCTTATGGTGGTCTTGCACGAGGCCTTCATGAAGCAGCAAAAGTGATTGAGAAGCATGCTGCACAGCTCTGTGTTCTAGCAGAAGACTGTGACCAGCCTGACTATGTTAAACTTGTTAAGGCCCTTTGCGCAGAGCACAATGTTAGCCTGTTGACGGTTCCTAGTGCAAAGACCCTTGGAGAATGGGCTGGTCTGTGCAAGATTGATTCAGAAGGAAAAGCTAGGAAGGTTACTGGTTGCTCCTGTGTTGTTGTCAAGGATTTTGGGGAGGAACATGAAGCTTACAATGTTGTTCTGCAGCATGTGAAATCTCAATGA 603 0.4677 MLNTLYAPPSVSRVMVESSIKEIVIRKIVYFQAPSSATGFDTIVFRSRKESCFSRSTRKMSGEEPAVVAAESAATIPGEPMDIMTALQLVLRKSLAYGGLARGLHEAAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSQ 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00092 200 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 86 179 IPR004038 -
Cca11g00092 200 Gene3D - 68 200 IPR029064 -
Cca11g00092 200 PANTHER 40S RIBOSOMAL PROTEIN S12 60 200 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca11g00092 200 PANTHER 40S RIBOSOMAL PROTEIN S12 60 200 - -
Cca11g00092 200 PRINTS Ribosomal protein S12E family signature 90 103 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca11g00092 200 PRINTS Ribosomal protein S12E family signature 145 166 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca11g00092 200 PRINTS Ribosomal protein S12E family signature 104 120 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca11g00092 200 PRINTS Ribosomal protein S12E family signature 170 183 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca11g00092 200 SUPERFAMILY L30e-like 80 198 IPR029064 -
Cca11g00092 200 ProSitePatterns Ribosomal protein S12e signature. 86 104 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00092 Cca-Chr11 1029302 1035569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00092 76 200 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 74.400 3.46e-66 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00092 K02951 - gmx:100305687 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00049 10 567171 568954 Cca11g00092 11 1029302 1035569 PCT