Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00090 ATGCCTGTTGACACGTCATCATTTTCCGGCCAAACCGTTTGCGTCACCGGCGCCGGCGGTTTCATAGCCTCTTGGCTCGTCAAGCTTCTACTGGAGAAAGGCTACACTGTCAGAGGAACCGTGCGAAACCCAGATGATCCGAAGAATGTTCATTTGAAAGAGTTGGAAGGAGCGAAGGAGAGACTCACTCTGCACAAAGTCGATCTCTTCGATATTCACTCCATCAACGCTGCTCTTCACGGTTGCCACGGCGTTTTCCACACCGCGTCTCCGGTCACCGACAACCCTGAAGAGATGGTGGAGCCAGCAGTGAACGGAACCAAGAATGTGATCATAGCAGCAGCAGAAGCCAAAGTGCGACGCGTGGTGTTTACTTCGTCAATTGGCACCGTCTATATGGACCCAAACACGAGTAGGGATGTGTTGGTTGACGAATCATTCTGGAGTGACTTGGATTATTGCAAGAACACAAAGAATTGGTATTGCTATGGGAAGACCGTGGCTGAACAAGCAGCATGGGATGTAGCAAAAGAGAGAGGGGTGGACTTGGTTGTGATGAACCCAGTTTTGGTTATTGGACCATTATTGCAACCTACCATTAATGCCAGTACAATTCATATCCTCAAATATCTTACTGGCTCTGCTAAGACTTATGTGAATGCCACTCAGGCTTATGTACATGTCAGGGATGTGGCATTAGCACACGTTCTTGTTTATGAGACACCTTCTGCTTCTGGTCGATACATATGTGCGGAAAGTTCCCTGCATCGTGGTGAGCTAGTTGAAATTCTGGCCAAGTTTTTCCCCGAGTACCCAATTCCTACCAAATGTTCAGATGAAAAGAACCCGAGACTAAAGCCCTACATATTTTCAAATCAAAAGCTGAAAGATATGGGAATGGAATTCACCCCAGTGAAGCAGTGTCTATACGAAACCGTTAAAAATCTGCAAGAGAATGGCCACCTTCCTGTCCCCCCAAAGCAAGAAGACTCATATTGA 999 0.4705 MPVDTSSFSGQTVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDPKNVHLKELEGAKERLTLHKVDLFDIHSINAALHGCHGVFHTASPVTDNPEEMVEPAVNGTKNVIIAAAEAKVRRVVFTSSIGTVYMDPNTSRDVLVDESFWSDLDYCKNTKNWYCYGKTVAEQAAWDVAKERGVDLVVMNPVLVIGPLLQPTINASTIHILKYLTGSAKTYVNATQAYVHVRDVALAHVLVYETPSASGRYICAESSLHRGELVEILAKFFPEYPIPTKCSDEKNPRLKPYIFSNQKLKDMGMEFTPVKQCLYETVKNLQENGHLPVPPKQEDSY 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00090 332 Pfam NAD dependent epimerase/dehydratase family 13 244 IPR001509 -
Cca11g00090 332 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 316 IPR036291 -
Cca11g00090 332 Gene3D - 10 332 - -
Cca11g00090 332 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 8 325 - -
Cca11g00090 332 CDD FR_SDR_e 13 299 - -
Cca11g00090 332 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 8 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00090 Cca-Chr11 994090 998120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00090 10 276 Monolignol Biosynthesis Gene Families AT1G80820 75.281 1.21e-143 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00090 K09753 - gmx:100811528 646.736