Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00088 ATGGATCCACAAAGCGAAAGCCAAAGCGAAAGCGAACGGAGCATAATCTTCAACAAGTACGAGATGGGGCGGGTCCTGGGGCAGGGAAACTTCGCCAAAGTGTACCACGGGAGAAACCTGGAGACCAACGAGAGCGTGGCCATAAAGGTGATAAAGAAAGAGAAGCTGAAAAAAGAGCGTCTGGTGAAGCAGATAAAGCGCGAGGTCTCGGTCATGAGGCTGGTGCGCCACCCCCACATCGTGCAGCTGAAGGAGGTGATGGCCACCAAGGGCAAAATATTCCTGGTGATGGAGTACGTGAAAGGCGGGGAACTCTTCTCCAAGGTGGCCAAGGGAAAGCTCTCGGAAGACCTCGCCAGGAAGTACTTCCAGCAGCTGATAAGCGCCGTTGACTTGTGCCACAGCCGCGGCGTCACCCACCGCGACCTCAAGCCCGAGAATCTCCTCCTGGACCAGAACGAGGACCTGAAAGTCTCCGACTTCGGACTCTCGGCGCTCCCCGACCAGCGGCGCGCGGACGGCATGCTCCTGACCCCCTGTGGGACCCCCGCTTACGTGGCACCCGAGGTCTTGAAAAAAAAAGGCTACGACGGCTCCAAGGCTGATATTTGGTCCTGCGGTGTCATCCTCTACGCCCTTCTCTCCGGCTACTTACCCTTCCAAGGCGAAAACGTCATGCGAATTTACCGAAAGGCTTTCAAAGCTGATTACGCTTTCCCTCACTGGATTTCCCCCCAGGCCAAATCCCTCATTTCCAACCTCCTCCTTGCCGACCCTGCTAAGAGGTTCTCCATTCCCGATATAGTCAAGGATCCTTGGTTTCAAATTGCTTTCATGACCCCGATTGCGTTTTCCATCAAGGAGGATGCACTCAACCACAACCTCCATTTCCACCACCACGAGGCTAAACCTCCCAGGCCGTTTTACAATGCGTTTGAGATTATTTCGTCGCTCTCCCACGGTTTTGATCTCAGGAGCTTGTTCGAGACCAGCAAGCGCTCGCCCTCCGTCTTTATATGCAAGTTTTCTGCTTCCGCCGTGCTGGGCAAGCTTGAGGCCGTCGCCAACAAGATTAACTTCAGGGTCACCGCCAAGAAGGAGTTTGCGGTGACCATGCAGGGGGCGGAGGAGGGCCGCAAGGGGAGGTTGGCCATGACGGTCGAGGTTTTCGAGGTGGCGCCGGAGGTGGCCGTCGTGGAATTTTCCAAGTCCGCCGGAGACACGCTGGAGTATGTTAAATTCTGTGAGGACCAAGTGAGGCCGTCGCTAAACGACATCGTTTGGAGCTGGCAGGGGGATGCTAATAGTAACAACCACCACTCCAACAGTTAG 1332 0.5548 MDPQSESQSESERSIIFNKYEMGRVLGQGNFAKVYHGRNLETNESVAIKVIKKEKLKKERLVKQIKREVSVMRLVRHPHIVQLKEVMATKGKIFLVMEYVKGGELFSKVAKGKLSEDLARKYFQQLISAVDLCHSRGVTHRDLKPENLLLDQNEDLKVSDFGLSALPDQRRADGMLLTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILYALLSGYLPFQGENVMRIYRKAFKADYAFPHWISPQAKSLISNLLLADPAKRFSIPDIVKDPWFQIAFMTPIAFSIKEDALNHNLHFHHHEAKPPRPFYNAFEIISSLSHGFDLRSLFETSKRSPSVFICKFSASAVLGKLEAVANKINFRVTAKKEFAVTMQGAEEGRKGRLAMTVEVFEVAPEVAVVEFSKSAGDTLEYVKFCEDQVRPSLNDIVWSWQGDANSNNHHSNS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00088 443 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00088 443 CDD CIPK_C 310 424 - -
Cca11g00088 443 SUPERFAMILY Protein kinase-like (PK-like) 16 335 IPR011009 -
Cca11g00088 443 Pfam NAF domain 308 363 IPR004041 GO:0007165
Cca11g00088 443 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00088 443 PANTHER - 11 439 - -
Cca11g00088 443 Coils Coil 48 68 - -
Cca11g00088 443 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00088 443 ProSitePatterns Protein kinases ATP-binding region signature. 26 53 IPR017441 GO:0005524
Cca11g00088 443 Gene3D Kinase associated domain 1, KA1 310 429 - -
Cca11g00088 443 PANTHER CBL-INTERACTING PROTEIN KINASE 16 11 439 - -
Cca11g00088 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Cca11g00088 443 ProSiteProfiles NAF domain profile. 304 329 IPR018451 GO:0007165
Cca11g00088 443 Gene3D Transferase(Phosphotransferase) domain 1 10 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00088 Cca-Chr11 951031 952362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00088 10 438 CBL-interacting serine-threonine protein kinases AT5G10930 61.364 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca11g00088 Pkinase 3.8e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00088 - - gmx:100812424 711.449