Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00083 ATGGCTTGTTCATCATGGATTAACACTTCGTTGGATCTCAACATAAATCCCCGCAGAGTTCATGAAGAGGTTCCCGTAAGTATAGAAAAGGAGGTAGAAAGCAAGCTTTTCTCATTGGGAATGCCCAAGTTTAACGTGGAAGAAGAGTCAACTAGTGACTTGGAGGAGGAACTGAAAAGGGTGACTGCAGAAAACAAGAAATTGTCTGAAATGCTCTCAGTGGTGTGTGAAAACTACAACACTTTGAGAAACCATTTGATGGAATATATGAGGAAAAATAACGAAAAGGAGGTTAGTCCAACATCAAAGAAAAGAAAGTCTGAAAGCAGCAACAACAATAGCACTTGTCTGATGGGAACAAACAATGGAAATTCAGAGAGCAGCTCCACTGATGAAGAATCTTGTAAGAAACCAAGGGAAGAAACCATCAAAGCAAAAATTTCGAGAGTTTATGTCAGAACCGAAGCATCTGATACTAGCCTTATTGTGAAAGATGGATATCAATGGAGGAAATATGGACAAAAGGTGACCAGAGATAACCCTTGTCCTAGAGCATATTTCAAATGCTCTTTTGCTCCAAGCTGTCCTGTCAAAAAGAAGGTAAATTACATAGCCAAGTGCTAA 624 0.3942 MACSSWINTSLDLNINPRRVHEEVPVSIEKEVESKLFSLGMPKFNVEEESTSDLEEELKRVTAENKKLSEMLSVVCENYNTLRNHLMEYMRKNNEKEVSPTSKKRKSESSNNNSTCLMGTNNGNSESSSTDEESCKKPREETIKAKISRVYVRTEASDTSLIVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVNYIAKC 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00083 207 SMART WRKY_cls 163 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g00083 207 Coils Coil 44 71 - -
Cca11g00083 207 MobiDBLite consensus disorder prediction 105 129 - -
Cca11g00083 207 SUPERFAMILY WRKY DNA-binding domain 159 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca11g00083 207 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 202 IPR044810 GO:0003700
Cca11g00083 207 PANTHER TRANSCRIPTION FACTOR 1 202 - -
Cca11g00083 207 Pfam WRKY DNA -binding domain 164 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g00083 207 ProSiteProfiles WRKY domain profile. 158 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g00083 207 Gene3D WRKY domain 148 206 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca11g00083 207 MobiDBLite consensus disorder prediction 91 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00083 Cca-Chr11 899440 902009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00083 4 202 WRKY Transcription Factor Family AT1G80840 54.854 5.46e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca11g00083 WRKY 2.2e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00083 - - gmx:100807966 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00083 11 899440 902009 Cca11g00083 11 899440 902009 ECH