Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00079 ATGTCTCTAAAGATAGCAGCAGAAATTTATCCTAAATCAGCATCAGAGATAGTGGAAGAGCCATGTTTGGTGGTAAGAGAATATGATGAAGATAGACACAAGGTGGCAGTAGAGAAACTTGAGAGTCTTTGTGAAGTTGGACAGAGTGGAAAACCATCTCTTGTCACTGACCTCATGGGAGACCCCATATGCCGTATCCGTCACTTTCAATGGCATGTCATGCTGGTTGCAGAATATGGAGAAGATGGAGAAGTTGTTGGGGTGATAAGGGGGTGTGTGAAAACAGTTACAAGAGGGAATTCGGTTTATGTAAAACTGGCCTATGTTTTGGGGCTCAGAGTCTCCCCTCGACACAGGAGATTTGGCATTGGCACAAAACTAGTTCAACATTTAGAAGAGTGGTGCAAGCAAAAAGGGGCTAAGTATGCATATATGGCAACAGATTGTACTAATGAGCCTTCAGTGAATTTGTTCACAAAAAAATGTGGCTACTCAAAATTCAGGACTCTAACCATACTAGTGCAACCTGTGCATGCTCACTACAAGCCAATTAGCTCTAGCATTGCTGTGCTTCGCCTTCCACCACGCCTAGCAGGGTCCATGTATAACCATATGTTTTCCAATTCTGAATTTTACCCCGAAGACATAGATTTGATTTTGTCCAACAAGTTGAATTTGGGCACATTCATGGCCATCCCCAAGAAGTACATGTCCAAGTGTGATCTAAAAAGGGGCATTCTCCCTCCAAGCTTTGCAATGTTAAGTGTGTGGAACACCAAAGATGTGTTCAAGTTGCAAGTGAAGGGTGTTTCACCTTTGGCACATGCATGCTGTGTAGGCACAAGGTTGTTGGACGAGTGGATGCCATGGCTAAGGCTACCTTCATTTCCAGATGTTTTTAGGCCATTTGGGGTTTATTTTGTGTATGGACTACACATGGAGGGAAAGTGTGGCACACAGCTCATGAAGTTCCTATGTGGATTTGTGCATAACATGGCAAGAGATGATGGGGGTTGTGGGGCCATTGTGGCTGAACTGGGCCAAAGGGACCCAGTAAGGGATGCAGTCCCACATTGGAGAAAGTTATCTTGGGCAGAGGACATGTGGTGCATTAAGAACCTTGAGGACACTAAGCAGAATATCCCTGAAAAATCTGATTGGTACGCTTCTAGATCCTCTTCACCTGTAATATTTGTTGACCCTCGAGATTTTTGA 1215 0.4412 MSLKIAAEIYPKSASEIVEEPCLVVREYDEDRHKVAVEKLESLCEVGQSGKPSLVTDLMGDPICRIRHFQWHVMLVAEYGEDGEVVGVIRGCVKTVTRGNSVYVKLAYVLGLRVSPRHRRFGIGTKLVQHLEEWCKQKGAKYAYMATDCTNEPSVNLFTKKCGYSKFRTLTILVQPVHAHYKPISSSIAVLRLPPRLAGSMYNHMFSNSEFYPEDIDLILSNKLNLGTFMAIPKKYMSKCDLKRGILPPSFAMLSVWNTKDVFKLQVKGVSPLAHACCVGTRLLDEWMPWLRLPSFPDVFRPFGVYFVYGLHMEGKCGTQLMKFLCGFVHNMARDDGGCGAIVAELGQRDPVRDAVPHWRKLSWAEDMWCIKNLEDTKQNIPEKSDWYASRSSSPVIFVDPRDF 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00079 404 PANTHER N-ACETYLTRANSFERASE 1 404 - -
Cca11g00079 404 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 23 194 IPR000182 GO:0016407
Cca11g00079 404 CDD NAT_SF 74 144 - -
Cca11g00079 404 Pfam Acetyltransferase (GNAT) family 75 164 IPR000182 GO:0016407
Cca11g00079 404 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 67 170 IPR016181 -
Cca11g00079 404 Gene3D - 23 169 - -
Cca11g00079 404 PANTHER OS12G0561600 PROTEIN 1 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00079 Cca-Chr11 873178 875678 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Cca11g00079 Acetyltransf_1 4.4e-18 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00079 - - gmx:100802670 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00079 11 873178 875678 Cca11g00079 11 873178 875678 ECH