Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00076 ATGGCTTCAAATTTCCTAATCCTTGAGCAACGTTTTTCCTTTTACCAATCTCTTCTCTTTTTCCCTCAATATTCATCTCTTCTCATTCCTTTCCACACCCCAATATACCACATACCACAATTTTGTACAATCAAAGCCTTAAACATTGTCACAGAAACTGCTGGACAGATCTGGTATTCCTGGCGGTCTCTATGTAATTTCTTCAAAATGTTTGACTCTGGTTACAAGTCACAGTATATTGGAGGCCAGAAGGAGAAGTTCGTAAGGTTGGATGATCTGGATTCAAATTTGTCATTGCCATCTAGCTCCAGTGGGATGAAAAAACTAAGATTTAATTTAGATTCTCTACCTATTCCTCTTCCTGGCCGTGGAAGAAAAAGAGCATCGAAATCCTTTAGGCTTGGAGTGAAGAAGAGTTCAGATGGACTAAAGACATTCGGAAGATCACTCAAAACTGGAGTCACTACTTGGGCAGTATTCCCAGAAGATCTCAAAGTGTCAGAAAAAAAAGTATTTGACCCTCAAGATAAGAACCTTCTGTATTGGAATAAGTTTTTTGAGATTCTATGCATTTTTTCTGTAGCTTGTGATCCCTTCTTTTTTTATCTGCCTTATTTCAACCACAAATCATTTTGCCTCGCCATAGATAACAAGCTAGCAAGTTTTACTGTCACATTGAGAACAATATGCGATGCCATTTATCTCGTCCGCATAAGTTTCCAATTCCGCACTGCTTACATTGCACCTTCATCTCgagtatttgggcgaggtgaacttgttatagatcctgcaaagattgccaagagatatttacaacgttacttcatcgttgacttcatttctgtgctgcctatgccacagATTGTAGTGTGGAAATATCTCAACAGAACAGGACGTGTAGAGGTATTGGCCACAAAAACGGCATTGTTGAGAATTGTGAATCTTCAATATTTTCCAAGATTTCTACGCTTTATACCTTTAGCTTCAGAAGTTAAAAAGACAGCTGGTGTTTTCTCTGAAAACGCATTGCTCAGTGCCATGTACTATTTGATCTGGTATATGCTTGCTAGTCATATAACCGGCTCTGTCTGGTACTTACTAGCCATTGAACGCAATGACACCTGCTGGAAGAATGCTTGTAAACAAGTTGACGGGTGCAATACACATTTCTTGTACTGTGGGAATTCGAACAAGCATATGTCAGGGTATGAAAGTTGGAGAAATGTCAGCGAGACTGTTCTGAAAACCAAATGCTTTGTTGAGGATGACAACTCAGAATTTAACTATGGAATCTTCTCTCAAGCTATACAGTCTGATATTGTTGCTTCCATAGAAGTTTTTCCTAAATTCTGTTACTGTTTATGGTGGGGCCTTCAAAACTTGAGTACACTTGGTCAGGGGCTTCTAACCAGTACCTACCCTGGAGAGGTTATGTTTTCCATAGTAATAGCTATTATGGGGCTTATCCTTTTTGCTCTTCTGATTGGGAACATGCAGACCTACCTTCAATCAATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGACGTGACTCTGAGCAGTGGATGCATCATCGCTTGCTTCCTCAAGAGCTGAGGGAAAGAGTGAGACGCTATGACCAATACAAGTGGCTGAACACCCGTGGAGTAGATGAGGAGAGCTTAGTTCAGAGTCTTCCGAAAGATCTCAGGAGAGATATCAAACGCCATCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCAAACATGGATGAACGCTTGCTGGATGCTATATGTGAGCGATTGAAGCCTACTTTATATACAGAGGGCACTTACATAGTGAGGGAAGGGGACCCAGTGAATGAGATGCTCTTCATCATACGTGGGCGTCTAGAGAGTGTCACTACAGATGGTGGAAGGAGTGGATTTTTCAACAGAGGTCTTCTGAAGGAAGCTGACTTCTGTGGAGAAGAGCTACTAACATGGGCATTGGACCCCAAATCTGCTGCTAACTTGCCATCATCAACGAGGACAGTGAAGGCTATAAATGAGGTGGAGTCATTTGCTTTGGAAGCAGAGGAGTTGAAGTTTGTTGCTTCACAGTTTAGGCACATTCACAGTAGACAGGTTCAGCACACATTCCGTTTCTATTCGCAGCAATGGAGGACGTGGGCTGCTATCTACATTCAAGCTGCTTGGAGGCGCCATTGCAGGAGAAAGATTGCAGAACAGCGCCGGAGGGAGGAAGAAGAGTTATATGATTCTGATAATGAAAACGGTGATGATTCAACCAGGGCCTTGGTCAAGCATTCTAATTCTTCTTTTGCTGCTTCTAGCCTTGGACTTGGTACAACCGTCTACGCTTCTCGCTTTGCTGCTAATGCACTTCGTCATCATAGGCTCCGTGGTTCAGGTTCCAGGGACATGATCAAACTACAAAAGCCCCCAGAACCTGACTTCAGCAGTCTTAGTCTTGATGAAGACTGA 2472 0.4041 MASNFLILEQRFSFYQSLLFFPQYSSLLIPFHTPIYHIPQFCTIKALNIVTETAGQIWYSWRSLCNFFKMFDSGYKSQYIGGQKEKFVRLDDLDSNLSLPSSSSGMKKLRFNLDSLPIPLPGRGRKRASKSFRLGVKKSSDGLKTFGRSLKTGVTTWAVFPEDLKVSEKKVFDPQDKNLLYWNKFFEILCIFSVACDPFFFYLPYFNHKSFCLAIDNKLASFTVTLRTICDAIYLVRISFQFRTAYIAPSSRVFGRGELVIDPAKIAKRYLQRYFIVDFISVLPMPQIVVWKYLNRTGRVEVLATKTALLRIVNLQYFPRFLRFIPLASEVKKTAGVFSENALLSAMYYLIWYMLASHITGSVWYLLAIERNDTCWKNACKQVDGCNTHFLYCGNSNKHMSGYESWRNVSETVLKTKCFVEDDNSEFNYGIFSQAIQSDIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLILFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPQELRERVRRYDQYKWLNTRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPTLYTEGTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEADFCGEELLTWALDPKSAANLPSSTRTVKAINEVESFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRHCRRKIAEQRRREEEELYDSDNENGDDSTRALVKHSNSSFAASSLGLGTTVYASRFAANALRHHRLRGSGSRDMIKLQKPPEPDFSSLSLDED 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00076 823 SUPERFAMILY Voltage-gated potassium channels 174 503 - -
Cca11g00076 823 Pfam Ion transport protein 181 508 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca11g00076 823 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 81 818 - -
Cca11g00076 823 ProSiteProfiles IQ motif profile. 717 746 IPR000048 GO:0005515
Cca11g00076 823 SUPERFAMILY cAMP-binding domain-like 511 701 IPR018490 -
Cca11g00076 823 MobiDBLite consensus disorder prediction 798 823 - -
Cca11g00076 823 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 81 818 - -
Cca11g00076 823 Gene3D Helix hairpin bin 508 572 - -
Cca11g00076 823 Gene3D Jelly Rolls 579 699 IPR014710 -
Cca11g00076 823 CDD CAP_ED 581 712 IPR000595 -
Cca11g00076 823 ProSiteProfiles cAMP/cGMP binding motif profile. 581 664 IPR000595 -
Cca11g00076 823 Pfam Cyclic nucleotide-binding domain 602 691 IPR000595 -
Cca11g00076 823 Gene3D - 184 506 - -
Cca11g00076 823 Coils Coil 734 754 - -
Cca11g00076 823 MobiDBLite consensus disorder prediction 740 760 - -
Cca11g00076 823 SMART cnmp_10 581 712 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00076 Cca-Chr11 842828 849863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00076 75 817 Ion Channels AT1G15990 68.883 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00076 K05391 - gmx:100810453 1364.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00076 11 842828 849863 Cca11g00076 11 842828 849863 ECH