Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00061 ATGGACAAGTACGAGAAGCTGGAGAAGGTGGGAGAAGGAACCTACGGGAAAGTGTACAAAGCAAGGGAGAAAGCCAGCGGAAAATTGGTGGCGCTGAAGAAAACGCGTCTGGAAATGGACGAAGAAGGGGTACCTCCGACGGCGCTGCGCGAAGTCTCCCTCCTCCAACTCCTCTCCCAGTCCCTCTACATCGTCCGCCTCCTAAACGTGGAACACGTGGACAAGGTCCCCAAGGCCCACGCCGCCTCCTCCAACCCCCAGGCCCACACCAAGCCCATCCTCTACCTCGTCTTCGAATACCTCGACACCGACCTCAAGAAGTTCATCGATTCCCACCGCAAGGGCCCAAACCCTAGGCCTCTTCCCCCCTCCCTCCTCCAGAGCTTCCTCTTTCAGCTCTGCAAGGGCGTCGCCCACTGCCACGGCCATGGAGTCCTCCACCGCGACCTCAAGCCGCAGAATCTTCTCCTCGACCAGCACAAGGGGATTCTCAAGATCGCCGATCTTGGCCTTGGTCGCGCTTTCACCGTTCCTCTCAAGAGCTATACTCATGAGATTGTCACTCTCTGGTACAGGGCCCCTGAGGTTCTCCTTGGCGCCACCCATTACTCCACCGGAGTTGATATCTGGTCCGTTGGCTGCATTTTTGCTGAAATGGTCCGAAGGCAACCTCTCTTTCCTGGCGATTCTGAGTTCCAGCAGCTCATTAACATATTCAAGATGTTGGGGACTCCAACCGAGGAGCAATGGCCGGGAGTTACTTCTCTGCGGGATTGGCATGTTTACCCACGCTGGGAGCCTCAGAGCTTGGCTAGGAATGTGCCCACCTTAGGACCTGACGGACTCGACCTTCTCTCGAAAATGCTTAGGTATAATCCTTCTGAGAGAATATCTGCCAAGGCGGCACTTGATCATCCCTACTTCGACAGTCTTGACAAGTCTCAATTTTAG 951 0.5542 MDKYEKLEKVGEGTYGKVYKAREKASGKLVALKKTRLEMDEEGVPPTALREVSLLQLLSQSLYIVRLLNVEHVDKVPKAHAASSNPQAHTKPILYLVFEYLDTDLKKFIDSHRKGPNPRPLPPSLLQSFLFQLCKGVAHCHGHGVLHRDLKPQNLLLDQHKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGATHYSTGVDIWSVGCIFAEMVRRQPLFPGDSEFQQLINIFKMLGTPTEEQWPGVTSLRDWHVYPRWEPQSLARNVPTLGPDGLDLLSKMLRYNPSERISAKAALDHPYFDSLDKSQF 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00061 316 Pfam Protein kinase domain 4 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00061 316 Gene3D Transferase(Phosphotransferase) domain 1 103 315 - -
Cca11g00061 316 SUPERFAMILY Protein kinase-like (PK-like) 1 311 IPR011009 -
Cca11g00061 316 PANTHER CELL DIVISION PROTEIN KINASE 1 316 - -
Cca11g00061 316 Gene3D Phosphorylase Kinase; domain 1 1 102 - -
Cca11g00061 316 SMART serkin_6 4 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00061 316 ProSiteProfiles Protein kinase domain profile. 4 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00061 316 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Cca11g00061 316 PANTHER CYCLIN-DEPENDENT KINASE B1-2 1 316 - -
Cca11g00061 316 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00061 Cca-Chr11 677209 679446 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00061 1 316 Core Cell Cycle Gene Families AT3G54180 80.063 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Cca11g00061 Pkinase 7.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00061 K07760 - gmx:100805119 568.155