Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00059 ATGGCGAAGAAATCGCAGAAAAGCCTCAAGAACACTACCTCCACCACCACTGCCAAGAGGACACGCAAAAGCGTCCCAAGAGACTCACCTCCACAACGAAGCTCAATCTATAGGGGTGTCACAAGGCATCGTTGGACTGGTCGATATGAGGCTCATTTATGGGATAAGAATTGCTGGAATGAATCACAGAGCAAAAAGGGAAGACAAGTATATCTAGGGGCATATGATGATGAAGAAGCTGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAAGATACCATTCTCAATTTTCCATTGTCGAATTATGAGGAGAAGCTCAAGGAGATGGAGGGCCAGTCAAAGGAAGAATATATTGGGTCCTTGAGAAGAAAAAGTAGTGGGTTCTCTCGGGGAGTTTCAAAATACAGAGGCGTAGCAAGACACCACCATAACGGAAGATGGGAAGCCCGAATTGGCAGGGTCTTCGGCAACAAATATCTATACCTCGGAACTTATGCTACACAAGAAGAGGCAGCTGCAGCATATGATAAGGCAGCTATAGAGTACAGAGGACTTAACGCCGTTACAAACTTTGACCTTAGCCGTTATGCCAATTGGATACGTCCCAACACTGAAGAAAATCATCAAAATCCCAGCAATGAAAATCTAAACACAAATCCTGAACTTGAACTAGGGTTTGTGTCGCATGATCTTGGTTCATCCAGCGATGAGACAAGAGAAGAGGGTTCTAGTGGTGCTACCACAACATCTTCTGCACTTGGGATACTCCTACAATCATCCAAATTCAAAGAAATGATAGAAAAGAATTCTTCAAGTACTACAGATTACCCTCCACCACCTGCAGAATCAAATCCTTCAAGACGCACTTTCCCTGAAGACATTCAAACAATTTTTGAAAGTGAAGATTCAGGTATCTACAATGAAACTGATGACATCATTTTTGGTGATTTGGGTTCCTTTGGTGCACCTATTTTTCATTACGAGCTCGATGCTTAG 1008 0.4365 MAKKSQKSLKNTTSTTTAKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGAYDDEEAAARAYDLAALKYWGQDTILNFPLSNYEEKLKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDKAAIEYRGLNAVTNFDLSRYANWIRPNTEENHQNPSNENLNTNPELELGFVSHDLGSSSDETREEGSSGATTTSSALGILLQSSKFKEMIEKNSSSTTDYPPPPAESNPSRRTFPEDIQTIFESEDSGIYNETDDIIFGDLGSFGAPIFHYELDA 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00059 335 MobiDBLite consensus disorder prediction 270 294 - -
Cca11g00059 335 ProSiteProfiles AP2/ERF domain profile. 36 102 IPR001471 GO:0003700|GO:0006355
Cca11g00059 335 MobiDBLite consensus disorder prediction 230 254 - -
Cca11g00059 335 SUPERFAMILY DNA-binding domain 137 198 IPR016177 GO:0003677
Cca11g00059 335 MobiDBLite consensus disorder prediction 1 20 - -
Cca11g00059 335 Pfam AP2 domain 137 188 IPR001471 GO:0003700|GO:0006355
Cca11g00059 335 Pfam AP2 domain 36 94 IPR001471 GO:0003700|GO:0006355
Cca11g00059 335 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 321 - -
Cca11g00059 335 SUPERFAMILY DNA-binding domain 35 104 IPR016177 GO:0003677
Cca11g00059 335 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR-RELATED 1 321 - -
Cca11g00059 335 ProSiteProfiles AP2/ERF domain profile. 138 196 IPR001471 GO:0003700|GO:0006355
Cca11g00059 335 Gene3D AP2/ERF domain 137 198 IPR036955 GO:0003700|GO:0006355
Cca11g00059 335 Gene3D AP2/ERF domain 36 104 IPR036955 GO:0003700|GO:0006355
Cca11g00059 335 CDD AP2 137 198 IPR001471 GO:0003700|GO:0006355
Cca11g00059 335 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Cca11g00059 335 PRINTS Ethylene responsive element binding protein signature 178 198 IPR001471 GO:0003700|GO:0006355
Cca11g00059 335 SMART rav1_2 36 108 IPR001471 GO:0003700|GO:0006355
Cca11g00059 335 SMART rav1_2 138 202 IPR001471 GO:0003700|GO:0006355
Cca11g00059 335 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00059 Cca-Chr11 640402 645851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00059 32 200 AP2-EREBP Transcription Factor Family AT5G57390 74.556 2.27e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Cca11g00059 AP2 4.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00059 K09285 - gmx:100807781 474.167