Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00050 ATGGATGGTATTCATGGGGGTGATTCTCGGATGCAAATGAGTGATGGACAGCATCCTATACATGTGCCATATGTGCAAGAACATGAGCATCATGGACTGCACCATATGAGCAATGGGAATGGCATTGATGATGATCAGAATGATGGAGCTGATACTAATTGTGGTGGAAGTGAGAGTGTGGAAGGTGAAGTCCCCTCCAACCATGGAAATCTCCATGACAATCACACTGTAATGATGGATCAAGGGGGTGATGGTGGGGATCAGCTTACGTTGTCTTTTCAGGGCCAGGTTTATGTCTTTGACTCCGTGTCACCAGAAAAGGTTCAAGCTGTACTACTGTTACTGGGAGGCCGCGAAATACCTCCGACTATGCCTTCCATCCCAGTATCTCCTCACAATAATAACCGGGGATTTACTGGTACTCCACAAAAATTCAGTGTCCCTCAGAGATTAGCTTCATTGATTAGGTTTCGTGAAAAGCGGAAGGAACGAAATTTTGACAAAAAAATCCGGTACACTGTTCGTAAAGAAGTAGCATTAAGGATGCAAAGAAATAAAGGTCAGTTTACATCTTCCAAGTCCAATCATGATGAATCTGCACCAACTGGGACAAATTGGGGGACAAATGAAAACTGGACAGCAGACAATAATGGATCCCAGCAACAAGATATTGTTTGTAGGCACTGTGGCATCAGTGAGAAGTGCACACCAATGATGCGACGTGGGCCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGTCTTATGTGGGCAAATAAGGGAACCCTGAGGGACCTATCAAGGACGGCACCCTTATCTGGACATAATTCCTCATTAATCAAGAATGAGAATAAAAGTTTAGAGGCCAACCAGATAGTCGATAGAGTTGCCGGCGAAGCTGATGATTCATCATGA 915 0.4481 MDGIHGGDSRMQMSDGQHPIHVPYVQEHEHHGLHHMSNGNGIDDDQNDGADTNCGGSESVEGEVPSNHGNLHDNHTVMMDQGGDGGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPPTMPSIPVSPHNNNRGFTGTPQKFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDESAPTGTNWGTNENWTADNNGSQQQDIVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSRTAPLSGHNSSLIKNENKSLEANQIVDRVAGEADDSS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00050 304 MobiDBLite consensus disorder prediction 40 73 - -
Cca11g00050 304 Gene3D - 216 286 IPR013088 GO:0006355|GO:0008270
Cca11g00050 304 MobiDBLite consensus disorder prediction 186 217 - -
Cca11g00050 304 Pfam CCT motif 150 192 IPR010402 GO:0005515
Cca11g00050 304 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 282 - -
Cca11g00050 304 SMART tify_2 82 117 IPR010399 -
Cca11g00050 304 Pfam GATA zinc finger 226 262 IPR000679 GO:0006355|GO:0043565
Cca11g00050 304 MobiDBLite consensus disorder prediction 32 73 - -
Cca11g00050 304 ProSiteProfiles CCT domain profile. 150 192 IPR010402 GO:0005515
Cca11g00050 304 CDD ZnF_GATA 225 285 IPR000679 GO:0006355|GO:0043565
Cca11g00050 304 PANTHER GATA TRANSCRIPTION FACTOR 28 5 290 IPR045280 GO:0006355
Cca11g00050 304 ProSiteProfiles GATA-type zinc finger domain profile. 220 268 IPR000679 GO:0006355|GO:0043565
Cca11g00050 304 Pfam tify domain 87 116 IPR010399 -
Cca11g00050 304 ProSitePatterns GATA-type zinc finger domain. 226 253 IPR000679 GO:0006355|GO:0043565
Cca11g00050 304 ProSiteProfiles Tify domain profile. 82 117 IPR010399 -
Cca11g00050 304 PANTHER GATA TRANSCRIPTION FACTOR 28 5 290 - -
Cca11g00050 304 SMART GATA_3 220 273 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00050 Cca-Chr11 540327 545940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00050 1 303 Tify Gene Family AT1G51600 62.541 4.39e-136 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca11g00050 CCT 8.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00050 - - pvu:PHAVU_008G254600g 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00050 11 540327 545940 Cca11g00050 11 540327 545940 ECH