Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00032 ATGCAGCTCCCACCGCCAACCAGGGACCGTCCGCAGCGTCGCCGGAGGGACCTCACGCTCCCGCTGCCCAAGAGGGATACCAATTTGGCGGTGCCGCTGCCGCTGCCGCCGACGAACACGGGAGCCaaccagaacaagaaccagaaccagaaccagaaccagaaccagaaccagaaccagaatcagaatcagaatcagaaccagaaccagaagcagaaccagaagcagcagcagcagcagcagcagcagcTGGAGATCCCGTTCTCggagctggagcggctgaaccgaatagggagcgggagcgggGGGACGGTGTACAAGGTGGTCCACAGGACGAGCGGGAGGGTGTACGCGCTGAAGGTGATATACGGGCACCACGAGGAGGCGGTGAGGAGGCAGATCCACAGGGAAATCCAGATCCTGAGGGACGTGGACGATCCGAACGTGGTGAAGTGCCACGAGATGTACGACCAGAACAGCGAAATCCAGGTGCTGCTGGAGTTCATGGACGGAGGGTCTCTGGAGGGGAAACACATCCCGCAGGAGCAGCAGCTGGCGGATCTGTCGAGGCAGATTCTCCGGGGGCTGGCCTACCTGCACCGGCGGTACATCGTGCACCGGGACATCAAGCCCTCCAACCTCCTGATAAACTCGAGGAAGCAGGTGAAGATCGCGGACTTCGGGGTGGGGAGGATTCTGAACCAGACGATGGATCCGTGCAACTCGTCGGTGGGGACGATCGCCTACATGAGCCCCGAGAGGATCAACACAGACATCAACGACGGGCAGTACGACGCGTACGCTGGGGACATATGGAGCTTTGGAGTTAGCATCCTCGAGTTCTACATGGGCAGGTTCCCCTTTGCTGTTGGGAGGCAGGGCGACTGGGCCAGCCTCATGTGCGCCATTTTGCTGCTGAAACAAGGGACATATTCTTCTTGGGTTGTGACACTTTGGCTTAGCTAG 966 0.5021 MQLPPPTRDRPQRRRRDLTLPLPKRDTNLAVPLPLPPTNTGANQNKNQNQNQNQNQNQNQNQNQNQNQNQKQNQKQQQQQQQQLEIPFSELERLNRIGSGSGGTVYKVVHRTSGRVYALKVIYGHHEEAVRRQIHREIQILRDVDDPNVVKCHEMYDQNSEIQVLLEFMDGGSLEGKHIPQEQQLADLSRQILRGLAYLHRRYIVHRDIKPSNLLINSRKQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSFGVSILEFYMGRFPFAVGRQGDWASLMCAILLLKQGTYSSWVVTLWLS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00032 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Cca11g00032 321 Gene3D Transferase(Phosphotransferase) domain 1 173 314 - -
Cca11g00032 321 CDD PKc_MAPKK_plant_like 89 304 - -
Cca11g00032 321 ProSiteProfiles Protein kinase domain profile. 91 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00032 321 SMART serkin_6 91 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00032 321 MobiDBLite consensus disorder prediction 1 83 - -
Cca11g00032 321 Gene3D Phosphorylase Kinase; domain 1 43 170 - -
Cca11g00032 321 ProSitePatterns Protein kinases ATP-binding region signature. 97 120 IPR017441 GO:0005524
Cca11g00032 321 MobiDBLite consensus disorder prediction 8 22 - -
Cca11g00032 321 MobiDBLite consensus disorder prediction 33 83 - -
Cca11g00032 321 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 11 305 - -
Cca11g00032 321 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 11 305 - -
Cca11g00032 321 SUPERFAMILY Protein kinase-like (PK-like) 63 297 IPR011009 -
Cca11g00032 321 Pfam Protein kinase domain 92 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00032 321 Coils Coil 43 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00032 Cca-Chr11 364346 366979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00032 1 305 MAP Kinase Kinase Gene Family AT1G51660 67.638 7.79e-144 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Cca11g00032 Pkinase 2.8e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00032 K13413 - gmx:100786390 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00032 11 364346 366979 Cca11g00032 11 364346 366979 ECH