Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00030 ATGAGGGACAAGGACAAAGAAAAAGAGACAGAGAAGAAGAAGTACCCTATCGGCGCCGAGCATTACCTTCTCTACGAGGAGATTGGGCAAGGCGTAAGCGCTTCCGTGCACCGCGCGCTATGCGTTCCCTTCAACGAGGTCGTCGCCATCAAAATCCTCGACTTCGAACGTGACAATTGCGATCTCAACAACGTTTCTCGTGAGGCTCAGACGATGATCCTCGTCGATCACCCTAACGTGCTCAAATCGCACTGCTCCTTCGTCAGCGAGCACAATCTTTGGGTGGTTATGCCGTTCATGGCCGGCGGTTCATGCCTCCACATATTGAAAGCCGCGCATCCCGATGGTTCTGAAGAGGTTGTCATTGCAACCATTCTCAAAGAGGTTTTGAAGGGTTTGGAGTATTTTCGCCATCACGGACACATCCACCGTGACGTCAAAGCCGGTAACATTCTCATTGATTCGCGCGGCGCCGTTAAACTCGGCGATTTTGGTGTTTCTGCCTGCCTATTTGATTCCGGCGACCGCCAACGCACGAGGAATACCTTTGTTGGAACACCTTGCTGGATGGCACCCGAGGTCATGGAGCAACTCCACGGCTATAACTTCAAAGCTGACATATGGTCATTCGGTATAACCGCGTTGGAGCTTGCTCATGGTCATGCTCCTTTCTCAAAGTTTCCACCGATGAAGGTTCTGCTCATGACTCTTCAAAATGCACCCCCTGGCCTTGACTACGAAAGGGATGGCAAGTTCTCTAAGTCGTTTAAGCAAATGATTGCTAGTTGCTTGGTAAAAGATCCTACAAAGCGACCTTCTGCAAGCAAGTTGATAAAGCATTCCTTCTTTAAGCAGGCTCGCAGCAATGATTATATAGTTAAAAAGCTTTTGGATGGGCTGCCTGCTCTAGGTGATCGAATGGAGGCCCTAAAGAGAAAAGAAGAAGATATGCTCGCACAAAAGAAAATGCCTGATGGAAAGATGGAGGAGTTGTCACAGAGTGAATACAAACGAGGAATTAGTGGTTGGAATTTCAATCTTGAAGACATGAAGGCTCAGGCTTCCTTGATCCACGATTTCGACGATGTTATATCAGATATCAATCATATAGCAAGTTCAAGTTCTTTATCTACACTTGATTCACAAGATAAACAAATGCCAATCGCAAATCACCGCCCTTCTCAATCTGCTGATTTGGAAGATAATGATGAGATGCGAAATCAATCAGCTTCTGTTCCGGTAGTTGATTCTGCAGTAAATGATGTCAAAACTAAGTTTGAAAAATCTGATGATGACTCTAGCATCACCAGTTCAAGCCATGAACCACAAACTTCTACATTCTGTCTTGATGATCACGTGGACAATAATTTGGCTGAAAAATCTGATATGGAAAATGGTGGAAGATCCGCGGAGGTTGTGTCTACCCATTATTATCATAGAAGAGGATGTTCATCAAGCATCTTACCTGAAGTTACCCTTCCACCTATTCGACCAGAAAGTGATAAACCACAAAATCTGCCTCAGAACGTTTCGAGTTGCAGTGCAACTGCAGTTACACAGTCAGGAGAGGACGTGCTTACTGAACTTCCTTCTAGAGTCTCAAAATCATCGGCTACTTCTGATGACACTGATGAGAAATCAAAGGTGCCAGTTGTACAGCAGAGAGGACGTTTTAAGGTTACATCCGAGAATGTTGACCCAGAAAAGGTGGCCCCTTCTCCTGTACTGCAAAAGAGTCACAGCATGCAGGTTTTTAGCCAGCATAATGTCGCTTCTATGCATACAACTTCGCCATTACTACCAGCATCTGAAGCCACACCATCAAATCTTGCTGGCGGCTCTCTGTTTTCTGTGTTGCACTCTGTACTGCAGACAAATATTCTTCAAAGGGAGAGCATTTTAAGTTTAATGAAGCAAATAACTGCCAGTGACTCAACAGCTGATGGCACATGTACCCCAGCACAGATAGCAGCAACTGAGAAATCTTTGCTTGAAACAGCTCACGAGAGGGAGAAGGAGTTACTTCACGAGATAACTGAGTTGCAGTGGAGGCTTATCTGTACCCAGGAGGAGCTTCAAAAATTGAAAACAGAAAACGCCCAGGTGTGA 2109 0.4552 MRDKDKEKETEKKKYPIGAEHYLLYEEIGQGVSASVHRALCVPFNEVVAIKILDFERDNCDLNNVSREAQTMILVDHPNVLKSHCSFVSEHNLWVVMPFMAGGSCLHILKAAHPDGSEEVVIATILKEVLKGLEYFRHHGHIHRDVKAGNILIDSRGAVKLGDFGVSACLFDSGDRQRTRNTFVGTPCWMAPEVMEQLHGYNFKADIWSFGITALELAHGHAPFSKFPPMKVLLMTLQNAPPGLDYERDGKFSKSFKQMIASCLVKDPTKRPSASKLIKHSFFKQARSNDYIVKKLLDGLPALGDRMEALKRKEEDMLAQKKMPDGKMEELSQSEYKRGISGWNFNLEDMKAQASLIHDFDDVISDINHIASSSSLSTLDSQDKQMPIANHRPSQSADLEDNDEMRNQSASVPVVDSAVNDVKTKFEKSDDDSSITSSSHEPQTSTFCLDDHVDNNLAEKSDMENGGRSAEVVSTHYYHRRGCSSSILPEVTLPPIRPESDKPQNLPQNVSSCSATAVTQSGEDVLTELPSRVSKSSATSDDTDEKSKVPVVQQRGRFKVTSENVDPEKVAPSPVLQKSHSMQVFSQHNVASMHTTSPLLPASEATPSNLAGGSLFSVLHSVLQTNILQRESILSLMKQITASDSTADGTCTPAQIAATEKSLLETAHEREKELLHEITELQWRLICTQEELQKLKTENAQV 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00030 702 MobiDBLite consensus disorder prediction 488 551 - -
Cca11g00030 702 Gene3D Phosphorylase Kinase; domain 1 10 99 - -
Cca11g00030 702 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 11 701 - -
Cca11g00030 702 MobiDBLite consensus disorder prediction 375 392 - -
Cca11g00030 702 ProSiteProfiles Protein kinase domain profile. 22 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00030 702 Pfam Protein kinase domain 25 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00030 702 MobiDBLite consensus disorder prediction 502 537 - -
Cca11g00030 702 MobiDBLite consensus disorder prediction 436 450 - -
Cca11g00030 702 Coils Coil 678 698 - -
Cca11g00030 702 Gene3D Transferase(Phosphotransferase) domain 1 103 335 - -
Cca11g00030 702 MobiDBLite consensus disorder prediction 421 435 - -
Cca11g00030 702 MobiDBLite consensus disorder prediction 375 450 - -
Cca11g00030 702 SMART serkin_6 22 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00030 702 SUPERFAMILY Protein kinase-like (PK-like) 20 284 IPR011009 -
Cca11g00030 702 CDD STKc_OSR1_SPAK 20 283 - -
Cca11g00030 702 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Cca11g00030 702 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 11 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00030 Cca-Chr11 343374 351362 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00030 11 684 MAP Kinase Kinase Kinase Kinase AT1G79640 64.088 0.0 861
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Cca11g00030 Pkinase 1.6e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00030 K08835 - gmx:100780339 1224.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00030 11 343374 351362 Cca11g00030 11 343374 351362 ECH