Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca11g00024 | ATGCCCGCCGTTTATGGAGCTCGCTTGACCACCTTCGAGGACTCCGAGAAGGAAAGTGAATACGGTTACGTTCGCAAGGTATCTGGACCAGTGGTGGTTGCAGATGGCATGGCTGGTGCTGCTATGTATGAACTGGTGCGTGTTGGTCGTGATAATCTCATTGGTGAAATTATTCGTCTAGAAGGGGATTCTGCTACTATCCAAGTTTATGAGGAAACCGCTGGCTTAATGGTTAATGATCCAGTGTTACGGACACACAAGCCTTTGTCCGTGGAGTTGGGGCCTGGAATATTGGGGAATATTTTTGATGGAATTCAGAGGCCTTTGAAAACTATTGCTAAAAGATCGGGTGATGTCTATATTCCTCGTGGTGTCTCTGTTCCAGCACTTGACAAAGATACACTATGGGAATTTCAGCCCAAGAAAATTGGTGAAGGCGACCTATTAACTGGTGGAGATCTATATGCTACTGTTTTTGAGAACAGTTTAATGCAACACCATATTGGACTTCCTCCTGATGCCATGGGAAAGATTACCTACATTGCTCCACCTGGCCAATATTCCATAACGGATAATGTATTGGAGCTTGAGTTTCAAGGTGTCAAAAAGAGTTTCACCATGCTTCAGACTTGGCCTGTACGTACACCAAGGCCTGTTGCATCAAAACTTGCAGCTGATACTCCTCTTCTAACTGGTCAGCGTGTTCTGGATGCTCTTTTCCCCTCAGTTCTTGGCGGGACTTGTGCAATTCCAGGAGCTTTTGGTTGTGGTAAAACAGTCATTAGTCAGGCTCTTTCTAAGTATTCCAATTCTGATGCTGTTGTTTATGTCGGTTGTGGGGAACGTGGAAATGAAATGGCAGAGGTTCTCATGGACTTCCCCCAACTTACAATGACATTACCTGATGGTCGTGAAGAATCTGTCATGAAGCGTACAACACTAGTGGCTAACACTTCAAACATGCCAGTGGCTGCTCGTGAAGCTTCAATTTATACAGGAATCACATTAGCCGAGTATTTTAGAGATATGGGTTATAATGTCAGTATGATGGCAGATTCTACATCTAGATGGGCAGAAGCATTGCGTGAAATCTCTGGACGACTGGCAGAAATGCCTGCAGATAGTGGATATCCTGCATACCTTGCAGCACGTTTAGCCTCTTTCTATGAACGGGCTGGGAAAGTGAAATGTCTTGGAGGCCCTGAACGTACAGGTAGTGTAACAATTGTTGGTGCTGTTTCACCACCTGGAGGAGATTTCTCAGATCCTGTGACATCTGCAACCCTCAGCATAGTTCAGGTTTTCTGGGGTTTGGACAAGAAGCTTGCTCAGAGGAAGCACTTTCCTTCTGTGAACTGGCTTATTTCTTATTCAAAATACTCAACGGCACTTGAAACCTTTTATGAGCAATTTGATCCAGATTTTATCAACATTAGGACAAAGGCTCGTGAAGTTCTGCAAAGAGAAGATGACCTGAATGAAATTGTTCAGCTTGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACTGCCAAGCTTTTGAGAGAGGATTATCTTGCTCAAAATGCCTTTACACCATATGACAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATAAGTTATACCCTCATCAAGCATCGTTTGGGAGATCTCTTCTATCGATTAGTGTCTCAGAAATTTGAGGATCCTGCCGAAGGTGAAGCTGCTTTGGTTGCCAAATTTCAGAAGTTACACGAGGACCTAACTAATGGTTTCCGCAACCTTGAGGACGAAACCCGATGA | 1872 | 0.4423 | MPAVYGARLTTFEDSEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGRDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHIGLPPDAMGKITYIAPPGQYSITDNVLELEFQGVKKSFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALETFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGSDGQKISYTLIKHRLGDLFYRLVSQKFEDPAEGEAALVAKFQKLHEDLTNGFRNLEDETR | 623 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca11g00024 | 623 | Hamap | V-type ATP synthase alpha chain [atpA]. | 19 | 622 | IPR022878 | GO:0046034|GO:0046961 | |
| Cca11g00024 | 623 | Gene3D | - | 459 | 622 | IPR024034 | - | |
| Cca11g00024 | 623 | TIGRFAM | V-ATPase_V1_A: V-type ATPase, A subunit | 20 | 611 | IPR005725 | GO:0033180|GO:0046961|GO:1902600 | |
| Cca11g00024 | 623 | ProSitePatterns | ATP synthase alpha and beta subunits signature. | 449 | 458 | IPR020003 | GO:0005524 | |
| Cca11g00024 | 623 | Gene3D | - | 134 | 205 | - | - | |
| Cca11g00024 | 623 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 202 | 462 | IPR027417 | - | |
| Cca11g00024 | 623 | SUPERFAMILY | N-terminal domain of alpha and beta subunits of F1 ATP synthase | 17 | 89 | IPR036121 | GO:0046034|GO:1902600 | |
| Cca11g00024 | 623 | Pfam | ATP synthase alpha/beta family, nucleotide-binding domain | 232 | 458 | IPR000194 | GO:0005524 | |
| Cca11g00024 | 623 | Coils | Coil | 601 | 621 | - | - | |
| Cca11g00024 | 623 | PANTHER | V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A | 3 | 622 | - | - |
Showing 1 to 10 of 19 entries
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca11g00024 | K02145 | - | gmx:100775727 | 1226.46 |
Showing 1 to 1 of 1 entries