Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00011 ATGGATGTGGTCAAGGGAATAACAGAATATGTCTCTTATGCTGCAATTGACAATTTGGTGCTCGGTGCAGCGTCCAGGCATGGCTTTATTAGATTCAAGTCAAGTATACCAAGCCACATATTAAAGGCGGCACCAGATTTCTGCACTGTGTATGTCATTTCTAAGGGGAGAATCTCTTCGGTTCGGAGTGCTACTCGAACAGCCCCACATGCATCCCCACTGCTCAGGCATATAGAGATTCTAAATGAAGAAAATGCAAATGAATCTCCCGTATCCTCTAGATCTATGAGCTTCAAAGACAAGAGGACATCAATGAAACCTTCGAGCTGGCAGGGTGGATCCATGAAAAGAATAGGGCTGAGTGGAAGATCAGGCATGGACTTCACAGAATCTGACTCTGACATATCATTTGTAAGCTCCGGGAGGCCCAGCAGTGTGCGTTCATCCTCTGTTTTCTATGACTATGTTGATTCCCGAACTTCAACCAGTTCAGATCGTAGCTTGGGATCAACCCGTATGAGACTCAAGTACGTTGACCCCAGTTCACCAGAAATTTCATTTTCAGAGGAAAGTAGCCGAACATCGTTTTCTTCTGCAGGCTTGCAGAACTCTGATGATGTAGAAGCTGATATGAGGAGGTTGAAGCTGGAGTTAAAGCAAACAATGGAAATGTACAGTACTGCATGCAGAGAAGCACTAACAGCACAACAGAAGTTAGTGGAACTGCACAACTGGAGACTTGAGGAAGAAAAGAAATTAGACGAGGCACGATTGGCCCAGGAAGCAGCAGAGGCAATTGCAGAGAAAGAGAAAGCAAGAAGTAAAGCAGCGAAGGACACAGCTGAAGCCGCTAAGCAAATTGCAAGGGTGGAGTCAAATAGAAGAGCAAGTGTTGAACTGAAAGCTCTTAAAGAAGCAGAGGACATGAGGAAGTTATTGGATGATCTGACCCATATTGACAAAAGATATAGGAAATACACAATTGAGGAGATTGAAACAGCTACCAACTCGTTTTCCGAATCTCAGAAAATAGGAGAAGGAGGGTACGGCCCTGTGTATAAGTGTAACCTTGATCACACTCAAGTGGCTGTGAAGGTTCTGCGTCCAGATTCTGCTCAAGGGAAGTCACAATTTCAGCAAGAGGTGAACATACTGGGGTGCATACGACATCCAAACATGGTGCTTCTTCTAGGAGCTTGTCCAGAGCATGGCGTACTGATTTATGAATATATGGCTAATGGAAGCTTAGAAGATTGTCTATTTGGGAAGAAGGAAGCTCCAAATCCAATGATGTGTTGGCAGGTGAGGTTTAGAATAGCTGCAGAGATAGCAACAGGATTACTGTTCCTCCATCAGACAAAGCCAGAACCCTTGGTGCACCGTGACTTGAAACCGGGAAACATTCTACTAGATCACAACTATGTAAGCAAGATCAGCGACGTGGGATTGGCGAGGCTTCTACCAGCTGTTGCTGAGAACGTGACACAGTGCCACATGACTTCGGCAGCGGGGACATTTTGCTACATTGATCCTGAGTATCAACAAACAGGAATGCTTGGAGTGAAGTCTGACGTGTATTCTCTAGGAATCATTCTTCTTCAGTTATTGACGGGTAGGACTGCAATGGGGTTGGCTCATAAGGTTGAAGAGTCCATTGAGAATGCCACATTTTCAGAAATGCTTGACCCTTGTGTCCCGGACTGGCCTCCCGTGCAAGCCTTGTGCCTTGCAAACATCGCTCTCCAATGTGCACAACTCAGACGAAAGGATCGCCCAGACCTTGCCACAGTAGTGTTGCCTCAGCTCCAACTTTTCAGAGACTTTGCCCAAGACAGCACCACTTCCATGCAACAGGAAGTGTTGAGTGAACCCAGGTCTGAACATTCCTCAACCCCATCAACGCCAACAGAACCAAAAGAAGGGGCGGATGAAATTTGA 1938 0.4587 MDVVKGITEYVSYAAIDNLVLGAASRHGFIRFKSSIPSHILKAAPDFCTVYVISKGRISSVRSATRTAPHASPLLRHIEILNEENANESPVSSRSMSFKDKRTSMKPSSWQGGSMKRIGLSGRSGMDFTESDSDISFVSSGRPSSVRSSSVFYDYVDSRTSTSSDRSLGSTRMRLKYVDPSSPEISFSEESSRTSFSSAGLQNSDDVEADMRRLKLELKQTMEMYSTACREALTAQQKLVELHNWRLEEEKKLDEARLAQEAAEAIAEKEKARSKAAKDTAEAAKQIARVESNRRASVELKALKEAEDMRKLLDDLTHIDKRYRKYTIEEIETATNSFSESQKIGEGGYGPVYKCNLDHTQVAVKVLRPDSAQGKSQFQQEVNILGCIRHPNMVLLLGACPEHGVLIYEYMANGSLEDCLFGKKEAPNPMMCWQVRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDHNYVSKISDVGLARLLPAVAENVTQCHMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIILLQLLTGRTAMGLAHKVEESIENATFSEMLDPCVPDWPPVQALCLANIALQCAQLRRKDRPDLATVVLPQLQLFRDFAQDSTTSMQQEVLSEPRSEHSSTPSTPTEPKEGADEI 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00011 645 Coils Coil 204 224 - -
Cca11g00011 645 Pfam Protein kinase domain 339 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00011 645 Gene3D Phosphorylase Kinase; domain 1 309 410 - -
Cca11g00011 645 PANTHER OS02G0152300 PROTEIN 1 630 - -
Cca11g00011 645 MobiDBLite consensus disorder prediction 86 116 - -
Cca11g00011 645 ProSiteProfiles Protein kinase domain profile. 338 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00011 645 Gene3D Transferase(Phosphotransferase) domain 1 411 625 - -
Cca11g00011 645 SMART serkin_6 338 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00011 645 MobiDBLite consensus disorder prediction 184 203 - -
Cca11g00011 645 SUPERFAMILY Protein kinase-like (PK-like) 321 598 IPR011009 -
Cca11g00011 645 MobiDBLite consensus disorder prediction 614 637 - -
Cca11g00011 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Cca11g00011 645 MobiDBLite consensus disorder prediction 181 203 - -
Cca11g00011 645 Coils Coil 253 279 - -
Cca11g00011 645 MobiDBLite consensus disorder prediction 86 115 - -
Cca11g00011 645 MobiDBLite consensus disorder prediction 614 645 - -
Cca11g00011 645 PANTHER BNAA05G18880D PROTEIN 1 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00011 Cca-Chr11 176907 181425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00011 2 638 Receptor kinase-like Gene Family AT1G78940 56.561 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Cca11g00011 Pkinase 2.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00011 - - gmx:100818471 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00011 11 176907 181425 Cca11g00011 11 176907 181425 ECH
Cca10g00004 10 68295 79078 Cca11g00011 11 176907 181425 PCT