Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00009 ATGCACCACAACCTTAACCTTGCAAGGTTGTGGATTGCTTTGCTTGCGGTCTCAACCACCGCAGTTCATTGCAAAACTAACTCCCAAGATGTTTCATCCCTTAATGCAATGTATAGCAGCTTAAATTCCCCTTCAAAGTTGAGTGGTTGGAAATCAGGTGGAGGTGATCCTTGTGGCGACTCCTGGGAAGGAATCAAATGCTCAGGTTCTTCTGTCACAGAAATAAATTTATCTAATCTGGGACTTACTGGATCAATGGGCTACCAGTTGTCCAGCTTAACATCGGTTACCTACTTTGATTTGAGCAACAACAACCTCAAGGGCGAAATACCATATCAACTTCCTCCAAATGCTCATTATATAGATCTTTCAAAGAACCATTTCAGTGGAAGTATGCCTTATTCCTTTTCTCAGATGGGTGATCTCAACCATCTAAATCTTGCACATAATCAGCTCAAAAACCAGTTGGGTGATATGTTTGAGAAGCTCAATAAACTCAAACAACTGGATGTATCATTCAATTCACTATCGGGAAACCTACCTCAGAGTCTCAAATCACTCAAAAACCTCAAGAAGTTGCATCTACAAAACAATCAATTCACTGGTTCAGTAAATGTCCTTGCCAAACTTCCACTTGAAGATTTGAACGTTGAAAACAACAAATTTACCGGTTGGGTCCCTGAGGAGTTAAAGGATATAAATAACTTGCAAACTGGAGGAAATTCTTGGTCAAAGGGTTCAGCACCTCCTCCGCCTCCTGGTACTCCCCCTCTGAAGAAGCATTCGGAGAAAAAGAAGAAAAAATCTGTTCTCAGTGGAGTAGCTATAGCAGGCATAGCTTTTGGCATACTAGTAGTAATTATAATTGCTGTTGCTCTTTGTAAGAGAAGGTCATCAAGACCTTCTTCACATTATATCGAAGAAGAGGGGCGTAGCAAGCATAAATCTTTTACATCTCAGGAGTTACCAAGAGATGATGTCAACAAAGGATTTAAGTCAATGGATTCGACTTCAATAGACGTACAGGCTTTGCAAAAATCTCCATCAATTGGTGTGAGTTCGTCAGTCTCGGATTGTGTGCAATCCTTTAATGACAATGAGTTTGCACTTCGTCTAAATTCTAAAAGAAGTGCATCAAGCCGTGTTACTAGTTTTTCACTGCAAGAGTTGCAGGCTGCTACTGCTAATTTTGCTTCAGGCCGACTTCTTGGTGAAGGATCCATAGGACGTGTATATCGGGCTAAATATGCTGATGGAAAGGTATTGGCTGTAAAACAAATCAAATCTTCTCTTTTCAATGGTGGTCCTCCTGAGGAATTCTCTCACATTGTTACAAACATAAGCAGAATTCACCACCCAAATATTGTTGAGCTTGTCGGTTATTGTTCAGAACAAGAGCACATGTTAATGTATGATTATTTCAGAAATGGCTCTCTCCATCACTTTTTACACTTATCAGACGACTTCAGCAAACCACTAACTTGGAACACCAGAGTCAGAATTGCATTGGGAACAGCTCGGGCTGTTGAGTACCTACATGAAATTTGCTCTCCTCCTTTATTGCACAAGAATATTAAGTCCTCCAATATTTTGCTTGACACGGATCTGAATCCTCGTCTCGCAGATTATGGTTTGGCATCCTTCCACCAGCGTACTAGCCAAAATCTTGGGGCAGGATATAATGCACCAGAATGCACACAACCTTCAGCGTTTACCCAGAAGAGTGATGTATACAGTTTCGGGGTAGTAATGCTGGAGCTTTTGACAGGTCGAATGCCTTTTGACAGTTCAAAGCCAAAAGCAGAACAATGTCTGGTTCGTTGGGCCACCCCACTACTTCATGACGTTATTGCGGTGGAGAAAATGGTTGACCCTGCCTTGCGGGGTCTTTACCCTCCTAAGTCACTCTTCCGATTTGCTGATATCATCGCCCTCTGTGTCCAGACTGAGCCTGAATTTCGGCCACCTGTGTCAGAGTTAGTCCAGGCTTTGGTACGATTAGTTCAACATTCAACTATAACAATGAAGGAGGATCTTGGAGCCTTTGGTCGGACCGATGACTTTGATGATTAA 2073 0.4202 MHHNLNLARLWIALLAVSTTAVHCKTNSQDVSSLNAMYSSLNSPSKLSGWKSGGGDPCGDSWEGIKCSGSSVTEINLSNLGLTGSMGYQLSSLTSVTYFDLSNNNLKGEIPYQLPPNAHYIDLSKNHFSGSMPYSFSQMGDLNHLNLAHNQLKNQLGDMFEKLNKLKQLDVSFNSLSGNLPQSLKSLKNLKKLHLQNNQFTGSVNVLAKLPLEDLNVENNKFTGWVPEELKDINNLQTGGNSWSKGSAPPPPPGTPPLKKHSEKKKKKSVLSGVAIAGIAFGILVVIIIAVALCKRRSSRPSSHYIEEEGRSKHKSFTSQELPRDDVNKGFKSMDSTSIDVQALQKSPSIGVSSSVSDCVQSFNDNEFALRLNSKRSASSRVTSFSLQELQAATANFASGRLLGEGSIGRVYRAKYADGKVLAVKQIKSSLFNGGPPEEFSHIVTNISRIHHPNIVELVGYCSEQEHMLMYDYFRNGSLHHFLHLSDDFSKPLTWNTRVRIALGTARAVEYLHEICSPPLLHKNIKSSNILLDTDLNPRLADYGLASFHQRTSQNLGAGYNAPECTQPSAFTQKSDVYSFGVVMLELLTGRMPFDSSKPKAEQCLVRWATPLLHDVIAVEKMVDPALRGLYPPKSLFRFADIIALCVQTEPEFRPPVSELVQALVRLVQHSTITMKEDLGAFGRTDDFDD 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00009 690 PANTHER OS01G0253100 PROTEIN 18 686 IPR045271 GO:0004714|GO:0006468
Cca11g00009 690 SUPERFAMILY Protein kinase-like (PK-like) 377 664 IPR011009 -
Cca11g00009 690 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Cca11g00009 690 Gene3D Ribonuclease Inhibitor 25 260 IPR032675 -
Cca11g00009 690 Gene3D Transferase(Phosphotransferase) domain 1 474 678 - -
Cca11g00009 690 MobiDBLite consensus disorder prediction 236 265 - -
Cca11g00009 690 SUPERFAMILY L domain-like 26 237 - -
Cca11g00009 690 ProSiteProfiles Protein kinase domain profile. 397 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g00009 690 MobiDBLite consensus disorder prediction 302 327 - -
Cca11g00009 690 Gene3D Phosphorylase Kinase; domain 1 359 473 - -
Cca11g00009 690 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 18 686 - -
Cca11g00009 690 Coils Coil 149 169 - -
Cca11g00009 690 Pfam Protein tyrosine and serine/threonine kinase 400 664 IPR001245 GO:0004672|GO:0006468
Cca11g00009 690 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00009 Cca-Chr11 141698 146492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00009 7 689 Strubbelig Receptor Gene Family AT1G78980 60.719 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Cca11g00009 PK_Tyr_Ser-Thr 3.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00009 - - ccaj:109807669 1313.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00009 11 141698 146492 Cca11g00009 11 141698 146492 ECH