Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00002 ATGAAACTGCAAGCACATATTCCGGGGGAGATGTCAGGACAGGTACCTAATCAAGCAGGGTCTCAATTGTCTGGACTAGCCCAACTGAATGGGAGTGCACTCTCTCATCAGATGCCACCTTTAGGTGGTGTACCCCGTTCAACAATTAATATGGACCCTGAATTGCTCAGAGCTCGCGCCTTTATTCAAGATAAGATCTTTGATATGTTGTTGCAACGACAACAGCAGCCGGTTACAGATTTACAGAGAAAGAAGCTTAAGGATCTTGCAAAACGCTTGGAGGAGGGCATGTTAAAAGCTGCTCTCTCTAAGGAGGATTACATGAACTTGGATACACTAGAGAGTCGTTTATCGAATTTCCTTCGACGAGCATCTATGAATAATCACAACCAACAATATCCACAGCTTGTTAACTCTTCTCCAATTGGTACAATGATACCAACCCCTGGTATGTCACATGTTCCAAATTCAAGCATGATGGTTGCATCTTCTATGGATGCCTCAATGATTTCTGCCAGCGGGTGTAATAGCATAGCATCAACACCTTTCAATAATGTTAACATGTTACCAGCTGGTAGTTTGCTTGGCAATTCCTTAAATAGATTTGATGGTTTGTCTAATGGTTATCAGCAGTCTTCTACCAGCTTTTCTGTTGCTTCGGGAGGTAACATATCATCAATGGGGGTGCAGAGAATGGCTAGCCAGATGATTCCCACTCCTGGATTCACAGTCAGCAGTAATCACTCACACATGAATATAGATTCTAATACTAATGGAGGTGCCTTTTCCAGTGCAGAGTCTACTATGGTACCACAGTCACAGCAGAAGCAGCATGTTGGTGGACAAAATAGTCATGTATTGCAGAACTTCAGCAGCCAAATGGGTAGTGGAATGAGATCTGGTTTACTTCAGAAGCCATTTACAAATTCAAATGGTGCAATAAATAGTGGGTCAGGCTTGATTGGAAACAATATACAACTTGCACATGAACCTGGCACTTCTGAGAACTTTGCCTCAACTTATGCCAATTCCCCTAAACACTTGCAGCAGCACTTTGATCAAAATCAGAAACCAGTAGTGCAGGGTGATGGATATGGAATGAATAATGTTGACACTTTTGCTTCTGGAAACTTGTATACATCTGCAACATCCTCTGGGCCCATGATGAACAATCAGAACACTAATTCAGTCAAATTGCCATCAATACCCAAAACTAGCTCATTGATAAGTGGTCACTCAAATTTGCATGGTATGCAGCAGGCTGCTCATATAAAGTCTCAACCAATTAATCAGTTAGAGAAGTTGAATTTCCAGTCTTCATTGACTTCACGAGATGGGCTTATGCATTCTCAACAGCAATATCAGCAAAGGACTCAACAATTGCAACAGCCAGATCAGTATATGCAGCAGCAATTTCAATCTATGCAAAATCAGCAGCCTCAGCATGTAGTCAACAGTGATGCTTTCGGTCAGTCTCAGCTTGCTTCCAATCTAGAAAACCGAGTAAAGTCTGAACCTGGAATTGAACACCATAAAGAAGTGCTCAATTCCCATGTCTCTGATCAGTTCCACATGTCTGAGATGCAGAGTCAGTTCCAGCAGAACTCAACTGAAGATTGCTCAAGGGGCGGTCAACATCTTCCATTCCCATCTGGTCACCGTGATTTATCATCAGCAACACCTCAAAATTCGCAACAAATGTTGCACCCACATCAATTGGTTGCAGAGTCTCAAAATAATTTTAACTGTCTTGGAGTTGGCTCACAATCCAAATCTGTAATTCTAAACCAATGGCCTCAATCACAAGATTGTAACCACACACTTGACAGTATTTCACATGATCAGCATCTCCGCTTGGATTTTCATCAAAGAATATCTGGACAAGATGAAGCTCAATGCAATAATTTGTCATCAGATGGATCTATTATTGGTCGGGCTGTTCTTTCTAGAGGCTCAGCTGAGCAGCTGGACTCAGGAAGTGCTATCAAAAAGGCACACAGGAATCAACAAAGGTGGCTTTTATTTCTACTTCATGCTCGACGGTGTTCTGCCCCTGAAGGACGATGCAAAGAACGATTTTGTTCTATTGCACAGAAGTTATGCAAGCACATAGATGGGTGCACCTTGCGCCATTGTCCATATCCTCGTTGCCATCATACTAGGGTGTTGCTTCATCATTTCATAAACTGCAAGGATCCATGTTGTCCTGTTTGTGTTTTTGTAAGAAAGTATCGACGTGCATTTCAATTCAAGCCTCAGATTCGTCCGGAACCTGAATCAAGCTTGCCAACTGCAGTGAATGGATCCTGTAAACCTTACAATACTGTAGGCACATCACCGAGATTGATCACAAAGCCTCCATTAGTTGTTGAAACTTCCGAGGACTTGCACCCATCTGTAAAACGTATAAAGATTGAGCACAGCTCCCAGTCCATTAATCCTGAAAATGACCATTCTGCTTCATCTTTTACTGCGAATTGTGAATCTCTTGTTTCCAGGGATTCTCAGTCCCAACCCCAAGCCTATCTGAATGCTGAGAAGTCTATTCCAATTAAGTCTGAGCTTACAGAAGTTAAGGCTGAAGCTCCAGTGCATGTAGTACATGAAAAGCTTAGTGAGATGAAAATGGATAACAATAATGCAGATGTTAAAACACCTAGTGCTGAACCTGTCAAATATGATGAACCTTCTAATTTAGCTAGGCCTGAAAATATAAAAGCTGAGAAAGAAACTGGACAAGACAGGCAAGAAAATGTTGGGCAGACATCTGAAAATGCAGCTGGCACCAAGTCTGGTAAGCCAAAAATAAAGGGAGTCTCATTGACCGAATTATTTACTCCAGAGCAAGTCAGGGAGCATATCACTGGTCTCAGGCAATGGGTTGGCCAGAGCAAGTCAAAAGCAGAGAAGAATCAAGCAATGGAGCATTCAATGAGTGAGAACTCCTGCCAATTGTGTGCTGTAGAGAAGCTTACCTTTGAACCACCACCTATCTATTGCACAACTTGTGGGGTTCGCATTAAACGAAATAACATGTATTATACCACTGGCACTGGTGACACACGACATTATTTTTGTATTCCATGCTATAATGATGCTCGTACAGAGAACATCATTGTTGATGGGACTCCTATTGCAAAGTCAAGATTGGAAAAGAAGAAGAATGATGAGGAAACTGAAGAATGGTGGGTTCAATGTGATAAATGTGAAGCGTGGCAACATCAAATTTGTGCCTTATTTAATGGCAGAAGAAATGATGGTGGACAAGCTGAATATACTTGCCCTAACTGCTATATTCAAGAAGTAGAAAGAGGAGAGCGCAAGCCCTTACCCCAAAGTGCTCTACTTGGAGCCAAGGACTTGCCGAGAACTATTCTTAGTGATCACATAGAGCAGCGGTTATTTAGACGGCTAAAGCAAGAAAAACAAGAAAGGGCAAGGATTCAAGGAAAAAGTTGTGATGAGATTCCTGGAGCTGAAGCTCTTGTTGTTAGAGTTGTGTCATCTGTTGACAAAAAGTTAGAAGTGAAACCTCGGTTTCTGGAGATTTTTCAGGAAGAAAATTACCCAACAGAATTTCCATATAAATCGAAGGTCATTTTGTTGTTTCAAAAGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAGTTTGGATCTGAATGTCAATTTCCTAATCAGCGCCGGGTGTATCTTTCATATTTGGATTCTGTGAAGTATTTTAGGCCTGAGGTTAAAGCAGTGACAGGAGAGGCTCTTCGGACTTTTGTTTACCATGAAATTCTGATTGGATATCTTGAATATTGCAAGAAACGTGGTTTTACAAGCTGCTATATATGGGCCTGTCCTCCATTAAAGGGTGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACACCAAAATCAGATAAGCTACGTGAATGGTATCTATCCATGTTAAGAAAAGCTGCCAAGGAGAATATTGTGGTCGACCTCACCAACTTGTACGATCATTTCTTCATATCTACCGGTGAATGTAGGGCTAAGGTTACTGCAGCAAGACTCCCATATTTTGATGGTGACTACTGGCCTGGTGCTGCAGAGGATTTGATTTATCAGCTTCGTCAAGAGGAAGATGGAAGGAAACAAAATAAGAAGGGAACAACTAAGAAAACTATAACAAAAAGGGCTTTAAAAGCATCTGGTCAGTCAGACCTTTCAGGAAATGCCTCAAAGGACCTGCTCCTTATGCACAAACTTGGTGAAACCATTTGCCCGATGAAGGAAGATTTTATTATGGTTCATTTGCAGCATGCATGTACTAGCTGTTGTATTTTAATGGTGTCTGGCAAACGTTGGGTTTGCAACCAGTGCAAGAATTTTCAGATTTGTGATAAGTGTTATGATGCAGAACTAAAGCGTGAAGAGAGAGAAAGACATCCCACTAATCAGAGGGAGAAACATACTCTTTATCCAGTTGAAATTACTGATGTTCCATCTGATACGAAGGACAGAGATGATATTCTTGAGAGTGAATTCTTTGACACTAGACAAGCATTTCTGAGTCTCTGCCAGGGGAATCATTACCAGTATGATACACTAAGGCGGGCAAAGCATTCCTCAATGATGGTCCTTTATCATCTCCATAATCCAACAGCTCCCGCATTTGTTACAACTTGCAATATATGTTATCTTGACATAGAAACTGGTCAAGGATGGCGCTGTGAAGTTTGCCCTGAGTATGATGTATGCAATGCTTGTTATCAAAAGGGAGGTATTGATCATCCTCATAAGTTGACAAATCATCCATCCATGGTGGATCGTGATGCTCAGAACAAAGAAGCAAGGCAGCTTCGAGTATTGCAGGTGATATAA 4869 0.4134 MKLQAHIPGEMSGQVPNQAGSQLSGLAQLNGSALSHQMPPLGGVPRSTINMDPELLRARAFIQDKIFDMLLQRQQQPVTDLQRKKLKDLAKRLEEGMLKAALSKEDYMNLDTLESRLSNFLRRASMNNHNQQYPQLVNSSPIGTMIPTPGMSHVPNSSMMVASSMDASMISASGCNSIASTPFNNVNMLPAGSLLGNSLNRFDGLSNGYQQSSTSFSVASGGNISSMGVQRMASQMIPTPGFTVSSNHSHMNIDSNTNGGAFSSAESTMVPQSQQKQHVGGQNSHVLQNFSSQMGSGMRSGLLQKPFTNSNGAINSGSGLIGNNIQLAHEPGTSENFASTYANSPKHLQQHFDQNQKPVVQGDGYGMNNVDTFASGNLYTSATSSGPMMNNQNTNSVKLPSIPKTSSLISGHSNLHGMQQAAHIKSQPINQLEKLNFQSSLTSRDGLMHSQQQYQQRTQQLQQPDQYMQQQFQSMQNQQPQHVVNSDAFGQSQLASNLENRVKSEPGIEHHKEVLNSHVSDQFHMSEMQSQFQQNSTEDCSRGGQHLPFPSGHRDLSSATPQNSQQMLHPHQLVAESQNNFNCLGVGSQSKSVILNQWPQSQDCNHTLDSISHDQHLRLDFHQRISGQDEAQCNNLSSDGSIIGRAVLSRGSAEQLDSGSAIKKAHRNQQRWLLFLLHARRCSAPEGRCKERFCSIAQKLCKHIDGCTLRHCPYPRCHHTRVLLHHFINCKDPCCPVCVFVRKYRRAFQFKPQIRPEPESSLPTAVNGSCKPYNTVGTSPRLITKPPLVVETSEDLHPSVKRIKIEHSSQSINPENDHSASSFTANCESLVSRDSQSQPQAYLNAEKSIPIKSELTEVKAEAPVHVVHEKLSEMKMDNNNADVKTPSAEPVKYDEPSNLARPENIKAEKETGQDRQENVGQTSENAAGTKSGKPKIKGVSLTELFTPEQVREHITGLRQWVGQSKSKAEKNQAMEHSMSENSCQLCAVEKLTFEPPPIYCTTCGVRIKRNNMYYTTGTGDTRHYFCIPCYNDARTENIIVDGTPIAKSRLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIQEVERGERKPLPQSALLGAKDLPRTILSDHIEQRLFRRLKQEKQERARIQGKSCDEIPGAEALVVRVVSSVDKKLEVKPRFLEIFQEENYPTEFPYKSKVILLFQKIEGVEVCLFGMYVQEFGSECQFPNQRRVYLSYLDSVKYFRPEVKAVTGEALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLSMLRKAAKENIVVDLTNLYDHFFISTGECRAKVTAARLPYFDGDYWPGAAEDLIYQLRQEEDGRKQNKKGTTKKTITKRALKASGQSDLSGNASKDLLLMHKLGETICPMKEDFIMVHLQHACTSCCILMVSGKRWVCNQCKNFQICDKCYDAELKREERERHPTNQREKHTLYPVEITDVPSDTKDRDDILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCNICYLDIETGQGWRCEVCPEYDVCNACYQKGGIDHPHKLTNHPSMVDRDAQNKEARQLRVLQVI 1622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00002 1622 ProSiteProfiles Zinc finger ZZ-type profile. 1553 1605 IPR000433 GO:0008270
Cca11g00002 1622 PANTHER CBP/P300-RELATED 439 1621 IPR013178 GO:0004402|GO:0006355|GO:0016573
Cca11g00002 1622 PANTHER CBP/P300-RELATED 126 430 IPR013178 GO:0004402|GO:0006355|GO:0016573
Cca11g00002 1622 Pfam TAZ zinc finger 670 738 IPR000197 -
Cca11g00002 1622 PANTHER HISTONE ACETYLTRANSFERASE HAC12 439 1621 - -
Cca11g00002 1622 PANTHER HISTONE ACETYLTRANSFERASE HAC12 126 430 - -
Cca11g00002 1622 Pfam Histone acetylation protein 1155 1375 IPR013178 GO:0004402|GO:0006355|GO:0016573
Cca11g00002 1622 ProSitePatterns Zinc finger ZZ-type signature. 1558 1585 IPR000433 GO:0008270
Cca11g00002 1622 SUPERFAMILY FYVE/PHD zinc finger 1059 1099 IPR011011 -
Cca11g00002 1622 SMART KAT11_2 1148 1445 IPR013178 GO:0004402|GO:0006355|GO:0016573
Cca11g00002 1622 MobiDBLite consensus disorder prediction 899 915 - -
Cca11g00002 1622 SMART zz_5 1552 1597 IPR000433 GO:0008270
Cca11g00002 1622 SMART zz_5 1432 1476 IPR000433 GO:0008270
Cca11g00002 1622 Gene3D - 1429 1489 IPR043145 -
Cca11g00002 1622 Gene3D TAZ domain 657 746 IPR035898 -
Cca11g00002 1622 Gene3D - 1552 1605 IPR043145 -
Cca11g00002 1622 ProSiteProfiles Zinc finger TAZ-type profile. 660 741 IPR000197 -
Cca11g00002 1622 CDD PHD_HAC_like 1025 1097 - -
Cca11g00002 1622 Pfam Zinc finger, ZZ type 1555 1596 IPR000433 GO:0008270
Cca11g00002 1622 Pfam PHD-finger 1056 1098 IPR019787 -
Cca11g00002 1622 MobiDBLite consensus disorder prediction 528 542 - -
Cca11g00002 1622 ProSitePatterns Zinc finger PHD-type signature. 1026 1097 IPR019786 -
Cca11g00002 1622 ProSiteProfiles Zinc finger ZZ-type profile. 1433 1496 IPR000433 GO:0008270
Cca11g00002 1622 MobiDBLite consensus disorder prediction 528 567 - -
Cca11g00002 1622 SUPERFAMILY TAZ domain 666 745 IPR035898 -
Cca11g00002 1622 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 1115 1551 IPR031162 GO:0004402
Cca11g00002 1622 SUPERFAMILY RING/U-box 1413 1487 - -
Cca11g00002 1622 SMART TAZ_2 663 741 IPR000197 -
Cca11g00002 1622 SUPERFAMILY RING/U-box 1534 1601 - -
Cca11g00002 1622 MobiDBLite consensus disorder prediction 254 279 - -
Cca11g00002 1622 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1050 1098 IPR013083 -
Cca11g00002 1622 MobiDBLite consensus disorder prediction 871 935 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00002 Cca-Chr11 20087 32137 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Cca11g00002 HAT_KAT11 1.7e-32 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00002 K04498 - gmx:100809207 2995.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00002 11 20087 32137 Cca11g00002 11 20087 32137 ECH