Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g02025 ATGGATAGGAAGACGAAGGAAAGGGAAAAGACGAAAGTGGTGATTAGGCATTTGCCTCCTTCTCTCACTCAATCTGATTTCTTCCAACACATCGATTCCCACTTCGCTGCTCGCTACAATTGGTTCTCTTTCCGCCCCGGCACCAGCACCCACAAGCGTCAGAGGCATTCCCGAGCATACATAGACTTCAAGTGTCCTCGTGATGTTTTCGAGTTTGCTGAGTTCTTTGATGGACACGTTTTTGTCAACGAGAGAGGTAGTGCCCAGCACAAAGCAATCGTTGAGTACGCGCCTTCTCAGCGTGTTCCAAAGCCAAGTACCAAAAAGGATGGCCGCGAAGGGACTATATACAAAGATCCAGACTATCTTGAGTTCCTCAAACTCATTGCAAAGCCTCAGGAGCACCTTCCCAGTGCAGAGATACAATTGGAAAGAAAAGAAGCCGAGCAAGCCGGGGCTAACAAGGAAACACCTATTGTCACACCTCTGATGGAATATGTTCGTCAGAAACGTGCTGTTGACAGTGGTATGCAGGCTTCATCAGCAGTGGCAAAAGTTAGCAGAAGATCAAGAGCTGCTTTGCCTGGCAAGCCTGGCTCAGGCAATACTAAAAGAGGATCTGAAAAGAAAAAGTATGTTCAGAAGGACAATGCTAAGAGTGCTGCTCGGAAAGAATCGAAAGACAAATCAGCCTTTACTGTTGTTCCGCGGCGGGAGGATCAATCAGCTGAATCAAGTATAAAAGGAATTTCTGAAATTGAAGCTTTGCATGGCATTGAAGGTCCAATTTCTGGAATTCCGTTGACTTCTGACTCAGGAAAGAAAAAAATCCTTCTTCTGAAAGGAAAACAGCGGGACATTTCCAGTGCCACCGAGGGCACAGTAAAACAGCAAAATGTACAATCTGGAAATTCTGCTATTTCAACTCCTGCAAAACAGAACCAGAGACGTGAAGCTGGTGGACGATTGATTAGGAGCATACTTCTAAATAATGAAGCTCGTCAAAGTCAGTCTACAACTAGTGCACAACATAAAATTCAAATATTAAGTTCTGAGAATGGTAAGCGACCACCTCGTCCTTTTGGCTCAAGATCGGGGCTAAATGATCAAGCCTCAAGTCAGGATTCTGGACAAGTTAATTCTGAAGGGGATTCTAAAAGGGCTTTGGACGAAAAGTTTGTAAAACGGGATCTGCATGGTTTGGGTAGAAGTGAGAAAACAGAAAAACGTACTAGAAACAAGGATAGACCTGATCGCGGTGTTTGGACACCACTTCGTCGTTCTGATGTTCCACATGCCGGTAACGATCACTCATCGTCCTCGTTGGCACAACCTACTCTGTCAAATCCCGAATCTGCTGAAGGAGAAGTGAAAGAAAACGTTCCTTCTGGAAACAGGGGCGGTGAATTCTCTGCTTCTTCAGGTGGACGTGGAAATTCTTCTATTGAGAATGGTTCTCAAAGAAATTTTACTCGCCGTGGAGCTTCCTATGTAGTGAAGGATGATGTTGCAGTCAGTTTAAGTGAAGGAAAACCTTCAAAGAAAAGTGTTGGGCATAGTGCTCATGAGGTATACATGTCATATGCTGATGTATTTTTTGAATCTCTTCTTCCAATGCAGCCTCGACGAAGAAGGTATGTTGGAGGTTCGACGGAAACGAAATCTAAGCATTTTCTGAAGATAATACTTCCCTCAGCCATTCATGGCAACCAAATGAGAATTCCCGAGGAGTTTATAAAAAGATTTGGAGATGAACTATCAACTGTTGCTACAGTTTCTGTTCCCGATGGTCGTATTTGGAAAATGAGGTTGAAGAAATGTGATAAACATGTTTTCTTCTGCACCCAATGGCGACACTTTGTAAATTACTATTCTCTCAGTTACGGTTCCCACCTAGTTTTCAGATATGAAGGGAACTCAAAATTTCGTGTTCTTATATTTGATATTACTTCTGCTGAGATTTGTTATCCATGCAAAACTCGAGGCACTAATAGTAATAGGAAGAGGTCCAAGGTTGATGACGAAGACAGTAATGTGAACTTAAAAAGTGAGAGCAAAACAAAGAAGGAAGAAAGTGATTTTTCTGATAGGAAACAAGTCCAAAGTGGATATAATGAAAATCACTCTTCTAATTCTTCGGAAATATCAAAGGATTCTGCCAATACATTCAAGCCCAAAAACCCCTTTGTCACTTCAACCATCAAGCTTGATCGATTGTATGTGGGAAGTAAATTTGCTAGCAAGTATCTGAAGGCAAATGTTGGTATGATGCTCCAAAACTGTAACGGGGAGCAGTGGGATGTTTCTTGCGTATGTCATAGTGGCAGCAGAGCAAAGATAATATTCAGGGGATGGAGTAAATTTGTAAGGGACAATGATCTATCAGAAGGAGATGCTTGTATGTTGGAGTTGATCAAGAGGGACCCAATTGTGCTAAAACTTACTACCTAA 2451 0.4251 MDRKTKEREKTKVVIRHLPPSLTQSDFFQHIDSHFAARYNWFSFRPGTSTHKRQRHSRAYIDFKCPRDVFEFAEFFDGHVFVNERGSAQHKAIVEYAPSQRVPKPSTKKDGREGTIYKDPDYLEFLKLIAKPQEHLPSAEIQLERKEAEQAGANKETPIVTPLMEYVRQKRAVDSGMQASSAVAKVSRRSRAALPGKPGSGNTKRGSEKKKYVQKDNAKSAARKESKDKSAFTVVPRREDQSAESSIKGISEIEALHGIEGPISGIPLTSDSGKKKILLLKGKQRDISSATEGTVKQQNVQSGNSAISTPAKQNQRREAGGRLIRSILLNNEARQSQSTTSAQHKIQILSSENGKRPPRPFGSRSGLNDQASSQDSGQVNSEGDSKRALDEKFVKRDLHGLGRSEKTEKRTRNKDRPDRGVWTPLRRSDVPHAGNDHSSSSLAQPTLSNPESAEGEVKENVPSGNRGGEFSASSGGRGNSSIENGSQRNFTRRGASYVVKDDVAVSLSEGKPSKKSVGHSAHEVYMSYADVFFESLLPMQPRRRRYVGGSTETKSKHFLKIILPSAIHGNQMRIPEEFIKRFGDELSTVATVSVPDGRIWKMRLKKCDKHVFFCTQWRHFVNYYSLSYGSHLVFRYEGNSKFRVLIFDITSAEICYPCKTRGTNSNRKRSKVDDEDSNVNLKSESKTKKEESDFSDRKQVQSGYNENHSSNSSEISKDSANTFKPKNPFVTSTIKLDRLYVGSKFASKYLKANVGMMLQNCNGEQWDVSCVCHSGSRAKIIFRGWSKFVRDNDLSEGDACMLELIKRDPIVLKLTT 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g02025 816 MobiDBLite consensus disorder prediction 365 383 - -
Cca10g02025 816 MobiDBLite consensus disorder prediction 203 245 - -
Cca10g02025 816 MobiDBLite consensus disorder prediction 329 350 - -
Cca10g02025 816 CDD B3_DNA 556 648 IPR003340 GO:0003677
Cca10g02025 816 MobiDBLite consensus disorder prediction 178 247 - -
Cca10g02025 816 ProSiteProfiles B3 DNA-binding domain profile. 557 650 IPR003340 GO:0003677
Cca10g02025 816 SUPERFAMILY RNA-binding domain, RBD 11 101 IPR035979 GO:0003676
Cca10g02025 816 MobiDBLite consensus disorder prediction 698 720 - -
Cca10g02025 816 SUPERFAMILY DNA-binding pseudobarrel domain 552 649 IPR015300 -
Cca10g02025 816 MobiDBLite consensus disorder prediction 434 453 - -
Cca10g02025 816 Pfam Smg-4/UPF3 family 9 172 IPR005120 -
Cca10g02025 816 SMART B3_2 558 650 IPR003340 GO:0003677
Cca10g02025 816 SMART B3_2 729 815 IPR003340 GO:0003677
Cca10g02025 816 CDD B3_DNA 731 808 IPR003340 GO:0003677
Cca10g02025 816 MobiDBLite consensus disorder prediction 662 720 - -
Cca10g02025 816 MobiDBLite consensus disorder prediction 666 697 - -
Cca10g02025 816 Gene3D - 709 816 IPR015300 -
Cca10g02025 816 CDD RRM_like_Smg4_UPF3 12 98 - -
Cca10g02025 816 MobiDBLite consensus disorder prediction 384 433 - -
Cca10g02025 816 MobiDBLite consensus disorder prediction 284 489 - -
Cca10g02025 816 Gene3D - 3 101 IPR012677 -
Cca10g02025 816 Pfam B3 DNA binding domain 732 808 IPR003340 GO:0003677
Cca10g02025 816 Pfam B3 DNA binding domain 558 648 IPR003340 GO:0003677
Cca10g02025 816 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS UPF3 7 602 - -
Cca10g02025 816 Gene3D - 549 651 IPR015300 -
Cca10g02025 816 MobiDBLite consensus disorder prediction 287 315 - -
Cca10g02025 816 SUPERFAMILY DNA-binding pseudobarrel domain 730 807 IPR015300 -
Cca10g02025 816 Coils Coil 136 156 - -
Cca10g02025 816 MobiDBLite consensus disorder prediction 466 489 - -
Cca10g02025 816 ProSiteProfiles B3 DNA-binding domain profile. 724 816 IPR003340 GO:0003677
Cca10g02025 816 PANTHER UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN 7 602 IPR039722 GO:0000184
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g02025 Cca-Chr10 38436971 38458889 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g02025 667 815 B3 DNA Binding Superfamily AT3G18990 32.075 2.77e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca10g02025 Smg4_UPF3 1.8e-49 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g02025 K14328 - gmx:100801152 882.093