Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g02024 atggggaggggaaagattgaaattaaaaggattgagaacacaacaaatcgccaagtgaccttctgcaagagaagaaatggacttctaaaaaaagcttatgagttatcagtgctgtgtgatgcagaagtggctctcattgtcttctcaagccgtggcagactctatgagtATTCAAATAACAACATAAGATCAACTATTGAGAGGTACAAAAAGGCAAGTTCAGATCATTCAAGTACGAGCACTACCACCGAAATTAATGCTCAGTATTATCAACAAGAATCTGCAAAGCTGCGACAGCAAATACAGATGCTGCAAAATTCTAACAGGCACCTGATGGGTGATGCCTTAAGCACACTGACTGTGAAGGAACTTAAGCAGTTGGAGAATAGACTTGAAAGAGGAATCACTAGAATCAGATCTAAGAAACATGAGATGCTACTGGCAGAAATTGAATACTTCCAGAAAAGGGAGATTGAGCTGGAAAATGAAAACCTTTGCCTTCGGACTAAGATAACTGACGTTGAAAGGCTTCAGCAAGTAAACATGGTTTCTGGACCAGAGCTGAATGCCATTCAGGCATTGGCTTCGCGTAACTTCTTCAATCCAAACATGATGGAAGGTGGATCTGTCTACCCTCAGTCAGATAAGAAGATTCTTCATCTTGGGTGA 669 0.3049 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIERYKKASSDHSSTSTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTKITDVERLQQVNMVSGPELNAIQALASRNFFNPNMMEGGSVYPQSDKKILHLG 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g02024 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca10g02024 222 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 2 213 - -
Cca10g02024 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca10g02024 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca10g02024 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca10g02024 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca10g02024 222 Gene3D - 13 110 IPR036879 GO:0003677|GO:0046983
Cca10g02024 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 213 - -
Cca10g02024 222 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977|GO:0045944
Cca10g02024 222 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Cca10g02024 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca10g02024 222 Coils Coil 87 107 - -
Cca10g02024 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cca10g02024 222 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca10g02024 222 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca10g02024 222 Coils Coil 124 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g02024 Cca-Chr10 38412118 38422935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g02024 1 222 MADS-box Gene Family AT4G09960 75.652 2.10e-120 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca10g02024 K-box 6.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g02024 K09264 - gmx:100301905 417.542