Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g02002 ATGGAATCTCGATTAGTTGATGGAAATGGTGGGATGGATGTTTCTGGGGATGTGGGTTTGAGTACATATGAAGTTCAGATACATCAAGAAACATATGAAGTGGATCCAAATGAGGGGTGTAGAGTACTAGAGAGTTCTTCTGGGGGAGAGTTGGGTATCTGTGGTGATCATGCTACTCAGGAGCCATATGAAGGCATGGAATTTGAATCTGAGGATGCTGCTAAGATATTCTATGATGAATATGCCCGACATTTAGGATTTGTCATGCGTGTGATGTCTTGTCGACGCTCAGAAAGGGATGGTAGGATTCTTGCCCGCAGGCTTGGATGTAATAAAGAGGGTTATTGTGTCAGTATCCGAGGGAAATTTACATCAGTTCGTAAACCTAGGGCCAGCACAAGGGAAGGTTGTAAGGCAATGATTCATATCAAATATGATAAGTCTGGAAAATGGGTGATAACAAAATTTGTGAAGGAGCATAATCATCCACTAGTAATCTCTCCACGTGAAGCACGTCAAACAATGGATGAGAAGGATAAGAAAATACAGGAATTAACAGCAGAGCTTCGACTTAAAAAGCGGTTGTGTGCAACATATCAAGAACAGTTAACTTCTTTTATGAAAATCGTTGAAGAGCACAGTGAGAAGCTGTCTGTGAAAATTCACCACGTAGTTAATAATCTTAAAGAATTTGAATCCATAGAAGAGGTCTTGCACCAGACGTAG 726 0.4077 MESRLVDGNGGMDVSGDVGLSTYEVQIHQETYEVDPNEGCRVLESSSGGELGICGDHATQEPYEGMEFESEDAAKIFYDEYARHLGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFTSVRKPRASTREGCKAMIHIKYDKSGKWVITKFVKEHNHPLVISPREARQTMDEKDKKIQELTAELRLKKRLCATYQEQLTSFMKIVEEHSEKLSVKIHHVVNNLKEFESIEEVLHQT 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g02002 241 Coils Coil 175 202 - -
Cca10g02002 241 Pfam FAR1 DNA-binding domain 77 165 IPR004330 -
Cca10g02002 241 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 29 240 - -
Cca10g02002 241 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 29 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g02002 Cca-Chr10 38031765 38036794 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca10g02002 FAR1 1.9e-28 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g02002 - - gmx:100787741 457.218