Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01984 ATGTCGATTGTGCTGAGGAAGGTGTGGGAAATGGTGTCCTGGAGATCGAATACGTCAACGGTAGCATCAACATCATCATCAGAAGTGCCACGTTCTGACATGGGTGAGTTGGAGCTGCTACCCAGTGACATCTTGATGCAAATTCTGAGGCTTTTGGGTCCAAAAGAGGCTGCAAAGTTGAGTGTGGCGTGCAAGGGTTTGAGATCCCTTGTGTCTGATAATAGACTTTGGGTTCACTTCCTTCAGACCCATCAGGCTGAACCCTCTGGGGATTCTGTCTTCTTTGCTGAGACCACCTTGAGCTCTGGCTACCCTCTTCCAGCCTTTGTTGGCCATAGGCCCCAGCTATCATTCAAGCATATTTATGGCCAGAGGGCACAAGTTCCGGGTTCTATTATCATCGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATATGGATGTCCATCAGGGAGATCAGCAACATTTTTGGAATTTGGTAACATTGAGTCACCAATGTATACTAGGCTTCGCCATTTTTTCACAACTATTTATAACAGGATGCAGGTGAAACAAAGTAAACAACCAGTTATTGTTTCTATACCAATATGTCATTATGATGATACTGAATCAGCAAAAGCATTGAGACAACAGCTTAAAGAGGCAATTTATGCTTCTTTGTTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCCACTCTAGCTCTGTACGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACATCTGTAGTTCCAATTTTAAATGGTAGAGTAATGCGCAAGGTGGGTGTGGAAGTCATTGGGCTGGGAGCACTGAAACTTACTGGATATCTTAGGGAGAAGATGCAACTGAATAACTTAAGCTTTCAATCTTTGTACACTGTTCGCACATTGAAAGAGAAGCTATGCTATGTTGCACTTGATTATGAAGCTGAGCTATTGAAAGATACACAGGCATCATTTGAAGCTGCAGGGGAAGGATGGTTTACCCTTTCAAAGGAGAGATTTCAGACAGCAGAGATCTTATTCCAGCCACATCTTGCTGGAGTGAACAAGCAGTGA 1092 0.4332 MSIVLRKVWEMVSWRSNTSTVASTSSSEVPRSDMGELELLPSDILMQILRLLGPKEAAKLSVACKGLRSLVSDNRLWVHFLQTHQAEPSGDSVFFAETTLSSGYPLPAFVGHRPQLSFKHIYGQRAQVPGSIIIDGGSGYCKFGWSKYGCPSGRSATFLEFGNIESPMYTRLRHFFTTIYNRMQVKQSKQPVIVSIPICHYDDTESAKALRQQLKEAIYASLFDMNVPAVCAVNQATLALYAAKRTSGIVVNIGFQVTSVVPILNGRVMRKVGVEVIGLGALKLTGYLREKMQLNNLSFQSLYTVRTLKEKLCYVALDYEAELLKDTQASFEAAGEGWFTLSKERFQTAEILFQPHLAGVNKQ 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01984 363 SUPERFAMILY Actin-like ATPase domain 131 251 IPR043129 -
Cca10g01984 363 SMART fbox_2 40 80 IPR001810 GO:0005515
Cca10g01984 363 Gene3D - 128 245 - -
Cca10g01984 363 Gene3D - 248 360 - -
Cca10g01984 363 Gene3D - 21 127 - -
Cca10g01984 363 SUPERFAMILY Actin-like ATPase domain 245 360 IPR043129 -
Cca10g01984 363 SUPERFAMILY F-box domain 26 88 IPR036047 GO:0005515
Cca10g01984 363 Pfam F-box domain 39 78 IPR001810 GO:0005515
Cca10g01984 363 PANTHER MACRONUCLEAR ACTIN 82 360 - -
Cca10g01984 363 Pfam Actin 178 361 IPR004000 -
Cca10g01984 363 PANTHER ACTIN 82 360 IPR004000 -
Cca10g01984 363 Gene3D Actin; Chain A, domain 4 281 359 - -
Cca10g01984 363 CDD NBD_sugar-kinase_HSP70_actin 132 282 - -
Cca10g01984 363 SMART actin_3 129 363 IPR004000 -
Cca10g01984 363 ProSiteProfiles F-box domain profile. 34 80 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01984 Cca-Chr10 37819097 37829276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01984 178 362 Cytoskeleton Gene Families AT3G46520 32.474 1.17e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01984 K16616 - gmx:100791973 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01984 10 37819097 37829276 Cca10g01984 10 37819097 37829276 ECH