Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01983 ATGTCCAATCACCAAGAGGGTGATACTGAATATATGGCGGATGAATGTGAAATGGAAGATGTAGAAGATGACATGGAGGATGAATCTATTAATAGAGAACGGGGTGGTGTAGAGTCTGACACAGATGAATATGATAACTCGAGTGGTAAGGTAGTTACAGCTGCTCAGGCTAGAAGAGGACAAGACATCCAGGGAATTCCTTGGAATAGCCTTAGCATCACTAGAGAAAGATATCGGAAAACTAGGCTTGAGCAATACAAAAATTATGAAAATATCCCTGGTTCAGGGGACAAGGCAGGAAAGGATTGTAAGAATACCAAAAAAGGATGTTCATTTTATGACTTCAGAAAAAATTCAAGATCAATAAAGTCAACAATTCTTCATTTTCAGTTGAGGAATTTGGTATGGGCTACATCAAAGCATGATGTATACCTTTTGTCACAGTTTTCAATAATGCATTATTCCTCTTTGACTTGCAAAAGTTCAGAAGTACTCAATGTTTCAGGACACGTTGCACCATCAGAGAAACATCCTGAAAGTCTATTAGAAGGATTTACTCACACTCAAGTCAGTACACTTGCAGTGAAAGAGAAGCTTCTAGTTGCAGGAGGATTTCAGGGTGAACTTATTTGTAAGCACCTAGATCGACCTGGTGTTAGCTTTTGCACGAGAACAACTTATGATGATAATGCTATCACCAATGCCATTGATATTTATGCTTCTCCCAGTGGTGCAGTTCATTTCACAGCCTCAAATAATGATTCTGGAGTCAGAGACTTTGATATGGAGAAATTTCAGCTTTCTAAGCAATTTCGTTTTCCTTGGCCAGTGAATCATACTTCTCTCAGCCCAGATGGTAAACTACTTCTAATTGTTGGAGACAATCCTGAAGGTATGTTGGTGGACTCCCAAAATGGAAAGACAATTGTTCCATTATCCGGGCATTTTGATTATTCATTTGCATCATCATGGCATCCTGATGGCGTGACCTTTTCCACTGGAAACCAGGACAAGACCTGCCGGATTTGGGACCTTCGGAATTTATCTAAGTCAGTAGCTGTGCTGAAGAGCAACCTTGGAGCCATCCGTTCAATAAGGTATAGTTCGGATGGCCAGTATATGGTTGTGGCAGAGCCTGCAGATTTTGTACATGTCTATGATGTAAAAAGTGGGTATGAGAAGGAACAAGAAATTGATTTCTTTGGGGAGATATCAGGCATATCTTTCAGTCCAGACACCGAGTCCCTGTTTATTGGGGTCTGGGATCGCACTTACGGTAGCCTTCTTGAGTATGGCCGACGTAGGCAATATTCATACCTTGATTCACTCCTTTAG 1335 0.4082 MSNHQEGDTEYMADECEMEDVEDDMEDESINRERGGVESDTDEYDNSSGKVVTAAQARRGQDIQGIPWNSLSITRERYRKTRLEQYKNYENIPGSGDKAGKDCKNTKKGCSFYDFRKNSRSIKSTILHFQLRNLVWATSKHDVYLLSQFSIMHYSSLTCKSSEVLNVSGHVAPSEKHPESLLEGFTHTQVSTLAVKEKLLVAGGFQGELICKHLDRPGVSFCTRTTYDDNAITNAIDIYASPSGAVHFTASNNDSGVRDFDMEKFQLSKQFRFPWPVNHTSLSPDGKLLLIVGDNPEGMLVDSQNGKTIVPLSGHFDYSFASSWHPDGVTFSTGNQDKTCRIWDLRNLSKSVAVLKSNLGAIRSIRYSSDGQYMVVAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRRRQYSYLDSLL 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01983 444 MobiDBLite consensus disorder prediction 12 27 - -
Cca10g01983 444 Gene3D - 225 438 IPR015943 GO:0005515
Cca10g01983 444 Pfam WD domain, G-beta repeat 308 344 IPR001680 GO:0005515
Cca10g01983 444 SUPERFAMILY WD40 repeat-like 197 424 IPR036322 GO:0005515
Cca10g01983 444 MobiDBLite consensus disorder prediction 28 45 - -
Cca10g01983 444 MobiDBLite consensus disorder prediction 1 48 - -
Cca10g01983 444 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 444 - -
Cca10g01983 444 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 1 444 - -
Cca10g01983 444 SMART WD40_4 348 387 IPR001680 GO:0005515
Cca10g01983 444 SMART WD40_4 264 302 IPR001680 GO:0005515
Cca10g01983 444 SMART WD40_4 305 344 IPR001680 GO:0005515
Cca10g01983 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 353 IPR001680 GO:0005515
Cca10g01983 444 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01983 Cca-Chr10 37797677 37802686 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01983 300 424 Miscellaneous Gene Families AT5G08390 26.400 5.14e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01983 - - gmx:100792497 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01983 10 37797677 37802686 Cca10g01983 10 37797677 37802686 ECH