Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01979 ATGAATATGACAAATAAGCCAAACTCTTGTGGTTCCACTAATGTGTTTCAGTCTCAACTGCAACAACATAGTGAAAGGCCAAATGGGTGTGAGGGATCATCTGGCCCCAGACCCACACCACCTTACCCTGCACCAACGGCTCGCTACCAGGACATTGTTCGTGATGCAAGCATCTTCTGGGAAAAGCTTCATGCTTTTCACGGATCACTTGGCTCCAAATTCAAGGTTGCTACTATAGGAGGAAAGTCACTTGATCTGCATCGCCTTTTCGTGGAAGTAACCACTCGTGGTGGAATTGAAAAGGTGATTTATGATCGTAACTGGAAGGAAGTGATTAAGGCCTTCAATTTCAGAGATACCATAACAAGTGCATCATTTATTGTGCGCAAATCATATCTATCGACACTTTATCACTTTGAGCAAGTGTATTATTTTGGGAGGCAAGGCATTCCTCCCCCAACACCTGATCTTGTGATTAGAGGCCAATCTGGCCATCCCTATAGCTCTGCAAGCATTCCATATGTTGCTGCTGTCAATAATTCATCTTTTCAGGGTAGTCCAGCACAGACATTTGATGCTCTGCTTCCTGGAACAATTGATGTCAAATTTGATGGTGGATATGTTGTTACAATGAGCGTGGGTTCTGAGAAGCTCCAAGGTGTCTTGTTTCATGTTCCTGACAACATGTCCCAGAGTTCTCATACTGAGGGCACATCAAGTCCACAGAATCACGGTGAAGGTGCGTCTAGTTTGCAGAGTCGAAAGAGAGCAAAACATGCACAGCGTGATCCATCTATGCCAAAGTCAAACAGGAGTGGCTACAACTTTTTCTTTGCTGAGAATTATGCTAGGCTGAAGCCAGCTTATCATGGGCAAGAGAAAGCAATTACTCAGAGGATTGGGTTTCTGTGGAACAATCTGTCAGAAGCAGAAAGACAGGTTTATGAAGAGAAAGCAATGAGAGATAAGGAAAGATACAGGACTGAGCTGATGGATTACAAAGCCACCAATTCAACTCCAAATGCTCAATAG 1032 0.438 MNMTNKPNSCGSTNVFQSQLQQHSERPNGCEGSSGPRPTPPYPAPTARYQDIVRDASIFWEKLHAFHGSLGSKFKVATIGGKSLDLHRLFVEVTTRGGIEKVIYDRNWKEVIKAFNFRDTITSASFIVRKSYLSTLYHFEQVYYFGRQGIPPPTPDLVIRGQSGHPYSSASIPYVAAVNNSSFQGSPAQTFDALLPGTIDVKFDGGYVVTMSVGSEKLQGVLFHVPDNMSQSSHTEGTSSPQNHGEGASSLQSRKRAKHAQRDPSMPKSNRSGYNFFFAENYARLKPAYHGQEKAITQRIGFLWNNLSEAERQVYEEKAMRDKERYRTELMDYKATNSTPNAQ 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01979 343 Pfam HMG (high mobility group) box 267 334 IPR009071 -
Cca10g01979 343 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 31 342 - -
Cca10g01979 343 SMART ARID_2 50 140 - -
Cca10g01979 343 CDD ARID_HMGB9-like 55 140 IPR045303 GO:0003677
Cca10g01979 343 SUPERFAMILY ARID-like 52 153 IPR036431 GO:0003677
Cca10g01979 343 SMART hmgende2 266 335 IPR009071 -
Cca10g01979 343 MobiDBLite consensus disorder prediction 251 265 - -
Cca10g01979 343 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 267 334 IPR009071 -
Cca10g01979 343 SMART bright_3 54 145 IPR001606 GO:0003677
Cca10g01979 343 Gene3D - 47 149 IPR036431 GO:0003677
Cca10g01979 343 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 31 342 - -
Cca10g01979 343 MobiDBLite consensus disorder prediction 1 46 - -
Cca10g01979 343 Pfam ARID/BRIGHT DNA binding domain 58 140 IPR001606 GO:0003677
Cca10g01979 343 CDD HMGB-UBF_HMG-box 267 330 - -
Cca10g01979 343 Gene3D High mobility group box domain 251 342 IPR036910 -
Cca10g01979 343 MobiDBLite consensus disorder prediction 227 272 - -
Cca10g01979 343 ProSiteProfiles ARID domain profile. 53 144 IPR001606 GO:0003677
Cca10g01979 343 SUPERFAMILY HMG-box 264 336 IPR036910 -
Cca10g01979 343 MobiDBLite consensus disorder prediction 227 250 - -
Cca10g01979 343 Coils Coil 316 336 - -
Cca10g01979 343 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01979 Cca-Chr10 37740874 37744670 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01979 12 339 ARID Transcription Factor Family AT3G13350 45.266 2.67e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Cca10g01979 ARID 8.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01979 - - ccaj:109793594 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01979 10 37740874 37744670 Cca10g01979 10 37740874 37744670 ECH