Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01978 ATGACAAATAATCCAAACCCAGGTGATTCTGATTCCACTAATTGCTTTCACTCTCAACTGCAATATCAATCATCTACAGTCAGACCCACTACACCTTACCCTGCACCAACGGCTCAGTACCAGGATATTGTTCATGATGCAACCCTCTTCTGGGAAAAGCTTCAGGATTTTCACGGATCATTTGGCACCAAATTCAAGGTTGCTACTATAGGAGGAAAGTCACTTGATCTGCATCGCCTTTTTGTGGAAGTAACCACTCGTGGTGGAATTGAAAAGGTGATTTATGATCGTAACTGGAAGGAAGTGATTCAGGTCTTCAATTTCAGTGATACCATTACAAGTGCATCATTTATGGTGCGCAAATCGTATCTATCCATGCTTTATCACTTTGAGCAAGTGTATTATTTTGGGAGGCAAGGCATTCCTCCCCCAATTCCTAATCTTATGATTAGAGGTCAATCAGGCCATTCCTATTGCTCCACAAGCATTCCGGAAGTTGCTGCTGTGAATGATTCACCTGATCAGGGTAGTCCAGTGGAGGCAAATGATGTTGTTGTTTCTGGATCAATTGATGAGAAATTTGATGGTGGGTATGTAGTTACAATGACTCTGGGTTCTGAGCAGATGAAAGGTGTCCTGTTTCATGTTCCTAACAACGTGTCCAAGAGAAGACACATCTAG 681 0.4229 MTNNPNPGDSDSTNCFHSQLQYQSSTVRPTTPYPAPTAQYQDIVHDATLFWEKLQDFHGSFGTKFKVATIGGKSLDLHRLFVEVTTRGGIEKVIYDRNWKEVIQVFNFSDTITSASFMVRKSYLSMLYHFEQVYYFGRQGIPPPIPNLMIRGQSGHSYCSTSIPEVAAVNDSPDQGSPVEANDVVVSGSIDEKFDGGYVVTMTLGSEQMKGVLFHVPNNVSKRRHI 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01978 226 SMART ARID_2 41 131 - -
Cca10g01978 226 Gene3D - 36 140 IPR036431 GO:0003677
Cca10g01978 226 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 24 222 - -
Cca10g01978 226 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 24 222 - -
Cca10g01978 226 SMART bright_3 45 136 IPR001606 GO:0003677
Cca10g01978 226 ProSiteProfiles ARID domain profile. 44 135 IPR001606 GO:0003677
Cca10g01978 226 Pfam ARID/BRIGHT DNA binding domain 49 131 IPR001606 GO:0003677
Cca10g01978 226 SUPERFAMILY ARID-like 41 144 IPR036431 GO:0003677
Cca10g01978 226 CDD ARID_HMGB9-like 46 131 IPR045303 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01978 Cca-Chr10 37728906 37730690 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01978 22 222 ARID Transcription Factor Family AT3G13350 43.868 5.69e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Cca10g01978 ARID 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01978 - - ccaj:109793595 449.129