Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01974 ATGGACAGTGAAAGAGAGGACAACAAGCAAGGCACAAATGCAGCACACACTGCAATCTCTAGCACTCTTAAAATTAGGATTGCAAGCAGCATCAGGCAAGGTGAGGAGAGTTTAAACAACTCAAACTTACCTTCACCAAACATAAACAATGGCATAGAAATAGAATCATCATCACCTTATGGTTCTCCTCTTGTGTCCCCACCTTCATCAGCATTTGTTTCGGCATTGCAGTCTCCATATATATCTCCAAGGGCCATAATCCCTGACCTCCCAAGTGGATCTCCTTTGGAAAACCAACCATCACTACcaacaacaacaacaaccacaaACCCTTCCACACCAGAAGATGTGCCAAGCAGTTCCTACACTCCCCCTTCTGATCAATATGAGTTCTCTGATGACACTGCTGACACAAGGCTCAAATATGTGACATGTGTTCCAGAAGCAGCTCCTCCACGCATCTCATTCTCATTTCCAGTCCCTAGAATCTCCTTTGCAAAAGGTCCTGTCTCACCTGCTTCCAATGCCAAACTCAGAAGCTGTGATGTCTACATTGGATTCCATGGCCAGAACCCCAACTTGGTGCGCTTCTGCAAGTGGCTCAAGTCTGAGCTTGAGCTTCAAGGGATTGATTGCATGCTTGCTGATAGGGCAAAGTACTCAGATACTCAGAGCCATGAGATTGCTGATAGAGTCATTTGCTCAGTGGCATTTGGAGTGGTGGTTGTTACAAGTTCCAGCTTCCTCAACCATTTTAGCATGGAGGAGGTGAGATTCTTTGCTCAAAAAAAGAACCTGATCCCTCTCTTGTTTGACACAGGACCTTCTGAGATTATGGCTCTTCTTAACTGCAACTCAATTGACAAAGAATGTAAGGAGGCAATTGATGGACTAATGAAGTGCAATGAATTCAATCTAGAGGCTAATGATGGTAACTGGCGAAGCTGCGTAGCGAGAACTGCTAGCGTTTTGAGAGCAAGACTTGGTAGGAAGAATGCTGAGCAGAAAGATAATATGCAAGTATTTGAAAGCTTACCTTTTCCAAGGAACACATACTTTGTAGGAAGAGAGAAGGAGATTATGGAGATTGAAGGTCTTTTTTTCGGACGAGGGAATTGTATGGAACAAGTCCAAGATCATTGTAGGACATCCATCAAAGGAGAAGCCAGTGGAAGTGGACAATCTGAAGGCCTTGCAGATGAGGAAAGTGAACCAGTGATAGGTAGGTGTGGGAGGTACATTAGTCTAGAAATGGGGAGGAGCAAAGAACCAACTTTAGAGGCTTGGGTTGAACCGATCATAGGAAACAATTCTGTGAAGAGGTTGAAGAATAAGAAGTCAAAGAGTGGAAACTACAAGAGCTTGTGTAGCAGTGTGATTTGCATTAATGGGGTTTCTGGGATTGGGAAGTCTGAGTTGGCGTTGGAATTTGCTCACAGATATCACCAGAGGTACAAAATGGTCTTGTGGGTTGGTGGTGAAGCCAGGTATCTTAGGCAGAACTTGTTGAACTTGTCTCTCAATTTGGGATTGGATGTTGGTGCTGATTCTGAGATGGAAAGGGGTCGGATTCGAAGCTTTGAGGAGCAAGAATTTGAAGCATTCAAGAGAGTCAAGAGGGAACTGTTTGGTGAGACTCCTTACTTGCTGATAATTGACAATCTTGAGACAGAAGTGGAATGGTGGGAAGGGAAGGATCTATATGACTTGATACCAAGAAACACGGGAGGGACACATGTGATTGTTACTACTAGGTTGTCCAAAGTAATGAGCTATGATACTATTCAGCTTCCACCTCTGCCATTATCTGAAGCAGTGCTTCTTATGATAGGAAGAAAAAGTAGAGAGTATCCAGAAGATGAGATGGACTTCCTTGAAAAGTTCAATGAGAAACTTGGAAGGTTGAGCTTTGGTTTGTGGATGATTGGTTCATTGTTGTCTGAACTTGCAATAAGCCCTTCTGCTCTCTTTGAGGCCATAAACCAAGTGCCACTCAGTGAAGATCCAAACACTTGCTATATGAGCATTGCGGAAGGGCAGTGGTGCAAGAGCAACCCTTTTCTCATGAAGACCCTCCTCTTTTGTTTTGAAACTTTGGAGAAAACTAAAGCTAAAGGGAACCTCCTGGCCATAAGAATGCTGCTTGTGAGTGGCTGGTTTTCCCCTGTTCCTATTTCAGCCACTTTATTAGCCAATGCGGCAAACAGTATCCCTATGGTTGAAAACCGTCTCAAGAAGTGGACCAAATATCTGAGCCTCACATCTAGTTGTTTATCATCGCGGACTTGGAAGAACGAAGAAGAGTCGGCTACATTTCTTGTGAAAATGGGACTGGCTAGAAGGGCTAATCAACATGATGGATGTTGGCTTCATTTCCATCCCATAACACAAGCATTTGCCAAAAGAACAGGCGGTTTGCAATATGCCAAGGCTGCAATTCAAGGTGTGAGAAAAACTGGCAGTCATGTAAACTCGGATCATTTATGGGCCTCAGCTTTCCTAGTGTTTGGGTTCAAATCTGAACCTCCACTTGTTCAATTGAAGGCAACTGACATGGTTTTGTACATCAAGAGAACAGCTCTCCCCCTAGCAATTCAAGCCTTCACCACTTTCTCAAGATGCAATTCAGCCTTGGAACTCTTAAGAGTGTGCACCAATGCATTGGAGGAAGTTGAGAAGTCCTTTGTCTCTCAAATCCAAGATTGGTCTCATGGTTCAATTTGTTGGAAAAGGAGGCTGCAAAGAGGCCAGAAAGTGGATGAATATGTGTGGCAGGATGTCACCTTGTTGAAGGCAACACTGCTGGAGACAAGAGCAAAGTTGCTTGCCAGAGGGGGGCATCTAGACAGTGCCAAGGAACTGTGCAGAACATGTATCAGTATCAGAACTGTCATGCTCGGCCATAACCATGCACAGACCTTGGCTGCTCAAGAGACATTGGCAAGGTTGGTGAGAATGAGGAGTAAGATATGA 2973 0.4393 MDSEREDNKQGTNAAHTAISSTLKIRIASSIRQGEESLNNSNLPSPNINNGIEIESSSPYGSPLVSPPSSAFVSALQSPYISPRAIIPDLPSGSPLENQPSLPTTTTTTNPSTPEDVPSSSYTPPSDQYEFSDDTADTRLKYVTCVPEAAPPRISFSFPVPRISFAKGPVSPASNAKLRSCDVYIGFHGQNPNLVRFCKWLKSELELQGIDCMLADRAKYSDTQSHEIADRVICSVAFGVVVVTSSSFLNHFSMEEVRFFAQKKNLIPLLFDTGPSEIMALLNCNSIDKECKEAIDGLMKCNEFNLEANDGNWRSCVARTASVLRARLGRKNAEQKDNMQVFESLPFPRNTYFVGREKEIMEIEGLFFGRGNCMEQVQDHCRTSIKGEASGSGQSEGLADEESEPVIGRCGRYISLEMGRSKEPTLEAWVEPIIGNNSVKRLKNKKSKSGNYKSLCSSVICINGVSGIGKSELALEFAHRYHQRYKMVLWVGGEARYLRQNLLNLSLNLGLDVGADSEMERGRIRSFEEQEFEAFKRVKRELFGETPYLLIIDNLETEVEWWEGKDLYDLIPRNTGGTHVIVTTRLSKVMSYDTIQLPPLPLSEAVLLMIGRKSREYPEDEMDFLEKFNEKLGRLSFGLWMIGSLLSELAISPSALFEAINQVPLSEDPNTCYMSIAEGQWCKSNPFLMKTLLFCFETLEKTKAKGNLLAIRMLLVSGWFSPVPISATLLANAANSIPMVENRLKKWTKYLSLTSSCLSSRTWKNEEESATFLVKMGLARRANQHDGCWLHFHPITQAFAKRTGGLQYAKAAIQGVRKTGSHVNSDHLWASAFLVFGFKSEPPLVQLKATDMVLYIKRTALPLAIQAFTTFSRCNSALELLRVCTNALEEVEKSFVSQIQDWSHGSICWKRRLQRGQKVDEYVWQDVTLLKATLLETRAKLLARGGHLDSAKELCRTCISIRTVMLGHNHAQTLAAQETLARLVRMRSKI 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01974 990 Gene3D - 166 296 IPR035897 -
Cca10g01974 990 PANTHER DNA REPAIR PROTEIN RADA 19 990 - -
Cca10g01974 990 MobiDBLite consensus disorder prediction 1 68 - -
Cca10g01974 990 SMART AAA_5 456 601 IPR003593 -
Cca10g01974 990 MobiDBLite consensus disorder prediction 86 129 - -
Cca10g01974 990 MobiDBLite consensus disorder prediction 94 129 - -
Cca10g01974 990 MobiDBLite consensus disorder prediction 12 68 - -
Cca10g01974 990 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 345 667 IPR027417 -
Cca10g01974 990 Pfam NB-ARC domain 438 591 IPR002182 GO:0043531
Cca10g01974 990 Gene3D - 435 596 IPR027417 -
Cca10g01974 990 SUPERFAMILY Toll/Interleukin receptor TIR domain 180 281 IPR035897 -
Cca10g01974 990 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 19 990 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01974 Cca-Chr10 37665237 37668209 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01974 - - gmx:100781208 1761.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01974 10 37665237 37668209 Cca10g01974 10 37665237 37668209 ECH