Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01971 ATGTCGGAGAGCGATCAGCGGCGTCTTCTGGGGTTGTCGGAGGATGACGTGGAAGCTCGGGGGTCGGAATTGGTGGCGGTCACTGGCAGCGGCAATGGTGGCAGTGGCAGCAACAAAGGGTTGAGAGATTTGTTAAGGTTGTCGGGTAACCGACACAGTTTCAAGCGTATTGACAAAGAAGAagatagggatagggatagggatagggataggaatagagatagagatagagatagagatagagatagaAGAGATCACAATCGGCATCTTCACGATGTGGATCTGGATTCTTCTGTTGATGTCCTTGGCGACAGTGCACCTCCTGAATGGGCGTTGCTTCTTATTGGTTGCCTCATTGGACTTACCACTGGCCTCTTTGTTGCATTTTTCAATAAAGGGGTGCATGTAATACATGAATGGGTATGGGCTGGTACTCCAAATGAGGGTGCTGCCTGGCTTCGTATTCAGAGATTGGCTGATACATGGCATCGGATCCTTTTGGTACCTGTCACTGGAGGAGTCATTGTTGGCATGATGTGTGGTTTACTGGAAATACTGGACCAAATAAAGCAGTCTACTTCCTCTCAAACTCAAACACAGGGTTTTGATTTTCTTGCAGGAATCTTTCCGACAATAAAGGCTATCCAGGCTGCAGTTACTTTAGGTACTGGATGTTCATTAGGTCCTGAAGGTCCTAGTGTTGATATTGGGAAGTCATGTGCCAATGGATTCTCACTAATGATGGAACACAACAGAGAAAGGAAAATAGCACTTGTTGCAGCTGGTGCAGCAGCTGGTATTTCTTCAGGTAGCTTCAATGCACCAGTTGCTGGTTGTTTCTTTGCTATTGAAACTGTGCTGCGGCCTCTTCGTGCAGAGAACTCTCCCCCATTTACAACTGCCATGATTATATTGGCTTCTGTTATCTCGTCAACTGTATCAAATGTTTTACAGGGAATCCGATCAGCGTTTACCATACCTGAATATGATTTGAAATCTGCAGCTGAGCTACCTTTATACCTGATATTGGGAATGCTATGTGGTGTTATAAGTGTGGCCATGAGTCGGTTGGTTGCTTGGTTCACCAAATTGTTTAAGATTATTCAGGATAAGTTTGGCATTCCTACTGTGGTCTCCCCTGCTTTAGGTGGCTTAGGAGCTGGGATCATTGCTCTTAAATATCCTGGAATATTGTATTGGGGTTTCACAAATGTGGAAGAAATTCTACCTCCTGGAATATGGCTTCTGACTCAATTGGTAGCTGCTAAGGTTATTGCTACAGCTCTTTGCAAGGGATCTGGGCTTGTAGGGGGTCTTTATGCTCCAAGTTTAATGATAGGTGCTGCAGCTGGTGCTGTATTTGGAGGCTTTTCTGCTGAAGTTATTAATTCAGCAATTCCTGGAAATGCTGCTGTTGCTCAACCCCCGGCGTATGCTCTGGTTGGAATGGCTGCTACATTAGCATCTGCTTGTTCTGTTCCATTGACTTCAGTTCTACTTCTGTTTGAGCTGACAAAAGATTATAGGATATTGCTTCCTCTCATGGGAGCTGTTGGATTGGCAATATGGGTTCCCTCAGTGACAAACCAGGCGAAGGAGAGTGATACTCCTGATACAAGTAACTCAGCAAGAGTATATTCACCAGTTTCACATGCTGAAGATGACAATGAGGGTAACTGGAGACGAGCCAATGATGAGAATGATTTAGAACTCTCTGTGGTTGGAGATGGCACTGATCTTGAAGCAATTGATAAGGAACTGCTTCTGGACAATCTTAAGGTTTCTCAGGCCATGTCAAAACAATATCTGAAGGTTTTGTCATCTGCAACGCTGAAAGATGCAATAAAATGCATGCATGACAACCAGCAGAACTGTGTGTTGGTGGTTGATAAAGAAGATTTTCTAGAAGGAATATTGACATATGGTGATGTTAAAAGGTGTCTGTCCCCGAAGTCTGATGATACTTCCAACGGCGATTCAGAGATTCGGGATACACACACATGCCTTGTTTCCTCTGTTTGTACTCGAGGGATGAGCTATCGCGGACGAGAGCGGGGTATTTTAACCTGCTATCCAAATACTAGTTTGGCTATGGCCAAAGAGTTGATGGAGGCCAAGGGCATCAAGCAATTGCCAGTTGTTAAACGAGGTGGAGATCACATTAAAGAAAGGAAGCGAAGAATTGTTGGTGTTCTCCATTATGACGCACTGTGGCAATGTCTCAGGAAAGAGATTAATCACCGGCAGGCAGCGTATCAAAACAGGACAGAAAACAATTTGGCTGTGATAACAACTAATGGACACTAA 2307 0.4335 MSESDQRRLLGLSEDDVEARGSELVAVTGSGNGGSGSNKGLRDLLRLSGNRHSFKRIDKEEDRDRDRDRDRNRDRDRDRDRDRRDHNRHLHDVDLDSSVDVLGDSAPPEWALLLIGCLIGLTTGLFVAFFNKGVHVIHEWVWAGTPNEGAAWLRIQRLADTWHRILLVPVTGGVIVGMMCGLLEILDQIKQSTSSQTQTQGFDFLAGIFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEHNRERKIALVAAGAAAGISSGSFNAPVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLQGIRSAFTIPEYDLKSAAELPLYLILGMLCGVISVAMSRLVAWFTKLFKIIQDKFGIPTVVSPALGGLGAGIIALKYPGILYWGFTNVEEILPPGIWLLTQLVAAKVIATALCKGSGLVGGLYAPSLMIGAAAGAVFGGFSAEVINSAIPGNAAVAQPPAYALVGMAATLASACSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTNQAKESDTPDTSNSARVYSPVSHAEDDNEGNWRRANDENDLELSVVGDGTDLEAIDKELLLDNLKVSQAMSKQYLKVLSSATLKDAIKCMHDNQQNCVLVVDKEDFLEGILTYGDVKRCLSPKSDDTSNGDSEIRDTHTCLVSSVCTRGMSYRGRERGILTCYPNTSLAMAKELMEAKGIKQLPVVKRGGDHIKERKRRIVGVLHYDALWQCLRKEINHRQAAYQNRTENNLAVITTNGH 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01971 768 Gene3D Clc chloride channel 98 537 - -
Cca10g01971 768 ProSiteProfiles CBS domain profile. 598 655 IPR000644 -
Cca10g01971 768 MobiDBLite consensus disorder prediction 59 84 - -
Cca10g01971 768 SMART cbs_1 601 649 IPR000644 -
Cca10g01971 768 SMART cbs_1 686 742 IPR000644 -
Cca10g01971 768 Pfam Voltage gated chloride channel 205 524 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca10g01971 768 SUPERFAMILY CBS-domain pair 592 746 IPR046342 -
Cca10g01971 768 PANTHER CHLORIDE CHANNEL PROTEIN CLC-F 15 767 - -
Cca10g01971 768 MobiDBLite consensus disorder prediction 21 43 - -
Cca10g01971 768 Gene3D - 580 741 IPR046342 -
Cca10g01971 768 Pfam CBS domain 686 733 IPR000644 -
Cca10g01971 768 Pfam CBS domain 594 647 IPR000644 -
Cca10g01971 768 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 15 767 - -
Cca10g01971 768 PRINTS Chloride channel signature 476 492 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca10g01971 768 PRINTS Chloride channel signature 213 232 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca10g01971 768 PRINTS Chloride channel signature 265 284 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca10g01971 768 PRINTS Chloride channel signature 494 513 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca10g01971 768 PRINTS Chloride channel signature 435 455 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca10g01971 768 MobiDBLite consensus disorder prediction 550 564 - -
Cca10g01971 768 CDD Voltage_gated_ClC 123 521 - -
Cca10g01971 768 MobiDBLite consensus disorder prediction 531 564 - -
Cca10g01971 768 SUPERFAMILY Clc chloride channel 108 528 IPR014743 -
Cca10g01971 768 ProSiteProfiles CBS domain profile. 683 749 IPR000644 -
Cca10g01971 768 MobiDBLite consensus disorder prediction 531 547 - -
Cca10g01971 768 CDD CBS_pair_voltage-gated_CLC_euk_bac 598 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01971 Cca-Chr10 37607739 37619375 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01971 - - gmx:100787625 1229.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01971 10 37607739 37619375 Cca10g01971 10 37607739 37619375 ECH