Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01963 ATGAAGCGAGAGCGAAAAAAGCGAAAAATGAAAAGAGAGAAACCATACCTTACGAGGAAGATGTCATGGTCACCAAGAGGAGCACCAATAGTAGTGGGGTTCGTTGTGATTGCCTTATTCATGACCGTACCAACAGCAGCAACAACAACCTCCGACGCCTTTCTGTTGATGCGCTTCAAGCAGTTACACGTTTCCTCCGATCCCAAAAACTTCCTCTCCGACTGGGCGCcgtcagcatcagcgtcagcgtcagcgtccccgtgcgcgtggcgcggcgtcTCCTGCTCCTCCGCCGAGCCCCGCAGCGTCACCGCTCTCGACCTCACCGGCGCCGCCCTCTCCGGCACCCTCCACCTCCCCACTCTTACCTCTCTCCCCTCGCTCCAAGAACTCATCCTACGTGGCAACTCCTTCTCCTCTTTCAACTTCTCCGTTTCACCCTCCTGCGCGCTCCAAACTCTCGACCTCTCATATAACAACTTCTCTGGCAAGTTTCCCTTCTTAAACCTCACCCCGTGTAACCGCCTCGCTCACCTTAACCTCTCTCATAACCTCATCACCGGCGGGCCTGGGCCTGGCCTTTCACTGGCCCAACTCGACTTATCCGGAAACCGTGTCTCTGACGTTAACCTTCTCTCTTCCGCTCTCGGAAGCTCCACTCTCCTTCTGCTTAACTTCTCCGACAACCAACTCGCGGGTCAACTCAGCGAAACGCTCGTTTCCAACATCTCTACTTTGGACCTCTCTTGTAACCTTCTCTCCGGGAAGGTACCGCCTCGGCTTGTAAACGACGCCGTTCAGGTTCTCGATTTCTCTTCCAACAATTTCTCCTCGCTGGATTTCGTCACGTGCAAGAGCCTCACACGGCTGAGTTTCGCGCGCAATGCGCTCTCCGGGGACGAGTTCCCGCGCGGGTTGAGTAACTGCAACAATCTCGAGGCTCTGGATCTTTCTCGCAACGAGTTCGCCATGGAGATTCCGGCGGAAGTTCTTACGAATTTGAAGAGTTTGAAGTCTCTGTTTCTCCAACACAACGAATTCTCCGGCGAGATACCGAGCGAGCTTGGAAGCCTCTGCGGAACTCTCGTCGAGCTTGATCTCTCCGATAACAAGCTCTCCGGCGCGTTGCCTTTGAGTTTCGCCAAGTGTTCTTCTCTGCAGAGTCTGAAGCTGGCGAAAAACTATCTCTCTGGAGACTTCCTCGATTCCGTCGTGAGCAAGCTTCCGAGTCTGAGGTATCTCAACGCGGCGTTTAACAACATAACGGGACCCGTTCCGGTGTCGCTTGTGAACTTGAAAGAGCTTCGGGTGCTGGACCTGAGTTCGAACCGGTTAAACGGCAATGTTCCTTCGTCGTTTTGTCCTTCGGAGTTGGAGAAGATAATCCTGGCTGGAAACTACCTGTCGGGGACGGTGCCGTCACAGCTCGGGGATTGTAAGAACTTGAGTAGCATCGATTTGAGCTTTAACAGCTTGAACGGTTCGATACCGTGGGAGATTTGGGCTTTGCCTAAGCTTTCCGATTTGATTATGTGGGCGAACAACATCAGTGGGGAAATTCCCGAGGGAATTTGTGTCAAGGGAGGGAACTTGGAGACGTTGATTCTGAACAATAATTTAATTTCCGGGTCCATTCCTAAGTCGATTGCGAATTGCAGCAACATGATTTGGGTTTCGTTGGCGAGCAACCGGATGACCGGGGAGATACCGGCTGGGATTGGGAATCTGAACGCGCTGGCGATTCTCCAGCTGGGGAATAACTCGCTGAGTGGGAGGATTCCACCGGAGATAGGCGAGTGCAGGAGGTTGATATGGTTGGATTTGAATAGTAATAACCTAACCGGGAGTATCCCGTTACAGGTTGCTGAACAAGCGGGGTTAGTTATCCCGGGGAGGGTTTCGGGGAAGCAGTTTGCGTTTGTGAGGAACGAGGGTGGTACTAGTTGCAGGGGTGCTGGTGGGTTGGTTGAGTTTGAGGATATTAGGACGGAGAGGCTTGAAGGTTTTCCCATGGTGCATTCGTGCCCGTCGACGCGGATTTACTCCGGTTGGACCGTCTACACCTTTGCCTCCAATGGCAGCATGATCTACCTTGACCTTTCCTACAACATGTTGTCTGGGACCATTCCTCAGAATTTGGGTGGGATGGCCTATTTGCAGGTGTTGAATTTGGGGCACAATAGGTTAACCGGGAGCATTCCTGAGAGTTTTGGTGGTTTGAAAGCAATAGGAGTGCTTGATCTGTCTCACAATAGCCTTCATGGCTTCATCCCTGGGTCATTGGAGAGTCTTTCTTTTCTCAGCGACCTTGATGTGTCTAACAACAACCTTACTGGGGTGATTCCCTCTGGAGGTCAGTTAACTACTTTCCCTGCCGCCAGATATGAGAACAATTCTGGCCTTTGCGGCGTGCCATTGCCAGCCTGTGGCAGTTCGAGTCGCTCGGTCGGTGCTGGGGTTTGGAAGAAGAAACAGCCTGTTGCAGCTGGGGTTGTCATTGGACTGCTTTGCTTTCTCTTGTTTGCGCTTGGGATTGTGCTGGCTTTGTACCGTGTGAGGAAGGTTCAGCAAAAGGAGGAGAAGAGGGAGAAGTATATAGAGAGTCTTCCGACTTCTGGGAGCAGCAGTTGGAAGATTTCCAGCTTTCCTGAGCCTCTGAGCATCAATGTTGCCACCTTTGAGAAGCCTCTGAGGAAGTTGACCTTTGCACATCTTCTCGAGGCTACTAACGGCTTCAGCGCTGAGAGCTTGATAGGTTCTGGGGGGTTTGGTGAAGTGTACAAAGCTAAGCTGAAGGATGGTTGTGTTGTTGCTATCAAGAAGCTCATTCATGTGACGGGTCAGGGAGATAGGGAGTTCATGGCTGAGATGGAAACTATTGGGAAGATTAAACATAGGAACCTGGTTCAGCTGCTGGGCTACTGTAAAGTTGGAGAGGAGAGGCTTCTTGTGTATGAGTTCATGAGATGGGGAAGTCTTGAGGCTGTTCTACATGACAGGGCCAGAGGAGGGGGCTCAAAGCTTGATTGGACTGCAAGGAAGAAGATTGCCATAGGGTCAGCTAGAGGTCTTGCATTTCTTCACCATAGTTGCATTCCTCACATTATTCACCGTGACATGAAGTCCAGCAACATTCTTCTTGATGAAAATTTTGAGGCCAGAGTTTCTGATTTTGGCATGGCAAGATTGGTTAATGCCCTTGACACTCATCTCACGGTCAGCACACTTGCCGGAACACCAGGTTATGTACCTCCTGAGTACTACCAAAGTTTTAGATGTACAGCAAAAGGGGATGTTTACAGCTATGGTGTTATACTGCTAGAGCTTCTATCAGGGAAGAGACCGATTGACTCTTCCGAGTTTGGTGATGACAACAATCTTGTTGGATGGTCTAAGAAGCTTTATAAAGAGAAAAGAATTAATGAAATACTGGATCCTGACTTGATTATGCAAACTTCTGGAGAAAGTGAACTATTGCAATACTTGAGAATTGCTTTCGAATGTCTAGATGAGAGACCCTACCGGCGGCCGACCATGATACAAGTGATGGCCATGTTTAAAGAGCTTCAGGGTGATGCAGATAATGATATGCTTGATAGCTTCTCTCTGAGAGACACTGTTATTGATGAAGCATAG 3636 0.4937 MKRERKKRKMKREKPYLTRKMSWSPRGAPIVVGFVVIALFMTVPTAATTTSDAFLLMRFKQLHVSSDPKNFLSDWAPSASASASASPCAWRGVSCSSAEPRSVTALDLTGAALSGTLHLPTLTSLPSLQELILRGNSFSSFNFSVSPSCALQTLDLSYNNFSGKFPFLNLTPCNRLAHLNLSHNLITGGPGPGLSLAQLDLSGNRVSDVNLLSSALGSSTLLLLNFSDNQLAGQLSETLVSNISTLDLSCNLLSGKVPPRLVNDAVQVLDFSSNNFSSLDFVTCKSLTRLSFARNALSGDEFPRGLSNCNNLEALDLSRNEFAMEIPAEVLTNLKSLKSLFLQHNEFSGEIPSELGSLCGTLVELDLSDNKLSGALPLSFAKCSSLQSLKLAKNYLSGDFLDSVVSKLPSLRYLNAAFNNITGPVPVSLVNLKELRVLDLSSNRLNGNVPSSFCPSELEKIILAGNYLSGTVPSQLGDCKNLSSIDLSFNSLNGSIPWEIWALPKLSDLIMWANNISGEIPEGICVKGGNLETLILNNNLISGSIPKSIANCSNMIWVSLASNRMTGEIPAGIGNLNALAILQLGNNSLSGRIPPEIGECRRLIWLDLNSNNLTGSIPLQVAEQAGLVIPGRVSGKQFAFVRNEGGTSCRGAGGLVEFEDIRTERLEGFPMVHSCPSTRIYSGWTVYTFASNGSMIYLDLSYNMLSGTIPQNLGGMAYLQVLNLGHNRLTGSIPESFGGLKAIGVLDLSHNSLHGFIPGSLESLSFLSDLDVSNNNLTGVIPSGGQLTTFPAARYENNSGLCGVPLPACGSSSRSVGAGVWKKKQPVAAGVVIGLLCFLLFALGIVLALYRVRKVQQKEEKREKYIESLPTSGSSSWKISSFPEPLSINVATFEKPLRKLTFAHLLEATNGFSAESLIGSGGFGEVYKAKLKDGCVVAIKKLIHVTGQGDREFMAEMETIGKIKHRNLVQLLGYCKVGEERLLVYEFMRWGSLEAVLHDRARGGGSKLDWTARKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNILLDENFEARVSDFGMARLVNALDTHLTVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGKRPIDSSEFGDDNNLVGWSKKLYKEKRINEILDPDLIMQTSGESELLQYLRIAFECLDERPYRRPTMIQVMAMFKELQGDADNDMLDSFSLRDTVIDEA 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01963 1211 SUPERFAMILY Protein kinase-like (PK-like) 893 1186 IPR011009 -
Cca10g01963 1211 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1035 1047 IPR008271 GO:0004672|GO:0006468
Cca10g01963 1211 PRINTS Leucine-rich repeat signature 362 375 - -
Cca10g01963 1211 PRINTS Leucine-rich repeat signature 432 445 - -
Cca10g01963 1211 Gene3D Transferase(Phosphotransferase) domain 1 988 1206 - -
Cca10g01963 1211 SUPERFAMILY L domain-like 284 619 - -
Cca10g01963 1211 PANTHER SERINE/THREONINE-PROTEIN KINASE BRI1-LIKE 1 34 1196 - -
Cca10g01963 1211 ProSitePatterns Protein kinases ATP-binding region signature. 918 941 IPR017441 GO:0005524
Cca10g01963 1211 ProSiteProfiles Protein kinase domain profile. 912 1189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01963 1211 Gene3D Ribonuclease Inhibitor 195 810 IPR032675 -
Cca10g01963 1211 Gene3D Ribonuclease Inhibitor 45 163 IPR032675 -
Cca10g01963 1211 SMART LRR_typ_2 334 358 IPR003591 -
Cca10g01963 1211 SMART LRR_typ_2 764 787 IPR003591 -
Cca10g01963 1211 SMART LRR_typ_2 576 600 IPR003591 -
Cca10g01963 1211 SMART LRR_typ_2 432 455 IPR003591 -
Cca10g01963 1211 SMART LRR_typ_2 503 527 IPR003591 -
Cca10g01963 1211 SMART LRR_typ_2 309 333 IPR003591 -
Cca10g01963 1211 SMART LRR_typ_2 740 763 IPR003591 -
Cca10g01963 1211 SMART LRR_typ_2 716 739 IPR003591 -
Cca10g01963 1211 SMART LRR_typ_2 125 148 IPR003591 -
Cca10g01963 1211 Gene3D Phosphorylase Kinase; domain 1 875 987 - -
Cca10g01963 1211 ProSiteProfiles Leucine-rich repeat profile. 195 216 IPR001611 GO:0005515
Cca10g01963 1211 Pfam Leucine rich repeat N-terminal domain 51 96 IPR013210 -
Cca10g01963 1211 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 34 1196 - -
Cca10g01963 1211 SUPERFAMILY L domain-like 49 323 - -
Cca10g01963 1211 Pfam Leucine rich repeat 719 777 IPR001611 GO:0005515
Cca10g01963 1211 Pfam Leucine rich repeat 361 421 IPR001611 GO:0005515
Cca10g01963 1211 SUPERFAMILY L domain-like 686 807 - -
Cca10g01963 1211 Gene3D - 633 690 - -
Cca10g01963 1211 SMART serkin_6 912 1186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01963 1211 Pfam Protein kinase domain 914 1184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01963 1211 Pfam Brassinosteroid receptor island domain 626 689 IPR045381 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01963 Cca-Chr10 37461096 37465346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01963 30 1210 Receptor kinase-like Gene Family AT1G55610 61.774 0.0 1440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Cca10g01963 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01963 - - gsj:114409366 1966.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01963 10 37461096 37465346 Cca10g01963 10 37461096 37465346 ECH