Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01959 ATGGCTTCGTCATCGAGCAGCGGATTGACGTTCAAGCTGCACCCTCTGGTAATCGTTAACATCTCCGACCATTACACGAGGGTCAAGTCTCAGATGAACCCAACCCACGCACCGCACAACAACGCCGCCCCCAACGGCGGCGACGGCGTCGTTTCGCCCCTTCCTCCGCGGGTCTATGGATGTGTCATAGGTGTGCAGAAGGGTCGCACCGTCGAGATCTTCAACAGCTTCGAACTCCTCTACGATCCTGCCACCCATTCTCTCGATCGCACCTTCCTCGAGAAGAAGCAAGAGCTCTATAAGAAGGTGTTCCCGCACTTCTACATACTGGGGTGGTATTCGACCGGGAGTGATGCGGAGGAATCAGATATGCATATTCACAAAGCTTTAATGGATATCAATGAAAGTCCAGTTTATGTTCTTCTCAATCCTTCTATCAATCATTCTCAGAAGGATCTCCCAGTCAGTATTTTTGAAAGTGAACTTCATGTCATAGATGGGATTCCACAGCTTATCTTTGTTCGCTCGAGCTATACTATTGAGACTGTTGAAGCAGAACGGATATCTGTTGATCATTTGTATCTAACATGTTTTCTTTTTGCAGTGGCTGCTCACCTTACTGGTATTCACAGTGCCATCAAAATGCTTCATAGCAGAATAAAGGTGCTACATCACTATCTTCTTGCAATGCAAAAAGCAGGTGATGTTCCTTGTGAGAATTCACTATTAAGACAAGTGTCAAGTCTCTTGAGAAGATTGCCTGCTATTGAATCTGGGAAATTTCAAGACGATTTCTTAATGGAGTACAATGACACCTTATTGATTAGTTACCTGGCCATGCTGACCAACTGCTCAAGTGCAATGAACGAGCTGGTGGACAAATTTAATACTGCGTATGATAGGCATAGCAGAAGGGGTGGACGAACGGCTTTTATGTGA 939 0.4569 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTHAPHNNAAPNGGDGVVSPLPPRVYGCVIGVQKGRTVEIFNSFELLYDPATHSLDRTFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMHIHKALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYTIETVEAERISVDHLYLTCFLFAVAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKAGDVPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNELVDKFNTAYDRHSRRGGRTAFM 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01959 312 CDD MPN_CSN6 9 308 IPR033859 GO:0000338|GO:0008180
Cca10g01959 312 Pfam Maintenance of mitochondrial structure and function 184 293 IPR024969 -
Cca10g01959 312 ProSiteProfiles MPN domain profile. 11 164 IPR037518 -
Cca10g01959 312 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 6A 2 312 - -
Cca10g01959 312 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 2 312 - -
Cca10g01959 312 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 136 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cca10g01959 312 Gene3D Cytidine Deaminase, domain 2 1 196 - -
Cca10g01959 312 SMART pad1_6 10 163 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01959 2 263 Eukaryotic Initiation Factors Gene Family AT2G39990 22.472 4.08e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01959 K12179 - gmx:100797079 567.77