Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01957 ATGGCGATGCGCGACCTCGTTTCGGGTTCCGCCGCGTGCGGCGActcctcttcctcctcctccgccGCAAACCCGCTCGCTTCCCTCGCCAACGCCCTTATCGGCTCTTCCTCTAAAACTCAGGAGAGGCTGAAGGAGATTCCTACATCCACTCCCACTGACCCTGCCTCGCAATTTTACTCCCCTGCCAATTACCTTCCAGGCTCCGAACTCGATAAGCCTCTATTGGATGCAAACTCGCAGGGTTCGGAGTTTTTGCAAAGGTTCCGTGGCGGTGGCGCGACGGGGCTTGAGGAGACGTGGGATGAGATACAGCGCGAGGGTGCGATTGCCCAAACGCGGCAGCTGCTGCCCCCGCTTCAACAACCGCCCTTGGAGGGGACACCGCAACGAGTTCTATCGAGCTTTTTGCACTCATTTCTTGATAGCAGCCGCGGTGGAGTGCCTTTTCATCCTGCCCCTCTTCCAATGTTGGGTTTATCTGAAGGTGATAAACAATGCATACGTGACCGGAGCAGCATAATGGCCAGACATCTCTTTGCAGATAAGAGCGAAGAATTCATTGATGCCCAAGTAAATGCACTTCTATGCTCTCTAGATATTGACAGCAATGTTCGTGGTAAGGGACCTATGCCTGAAAGATTTAGGGAGCTTGAGGATTACTGGAATGAGTCTCAAGGAAACCTGAGACTTGGTGCTCCTGCTGCTGACGGGTGGATTACTGAATTTAGTCAACATAGAGAAAAATATGATAATCCTGATTCATGGGCTAACTCATTTGAGCAACAATATGGTGCAAATGGTTGGGCGTCTGAATTTGAACGTTCACAATTGTCATCAGTAGATCAAATGCGAGGTATGAACATGCCAAACTTTGCTGCAATGGAGCAGACTCGTATGCTCGCGAACACATTGGCCCAAAATGGTGACCCTAAATTTCAGAACTCAAAATTCCTTCAATTTGTATCAAAGATGAGCCGTGGTGAGTTGATTATTGATGACAATCAAGTTAAAGAGAATGCTGCATCTGGAGATTGGGCAACAGAATACAATCAACAATATAATCATGGTCATGCATGGGCTGGAGAATTTTTAAATGATAAGGTTTATCATGGACCTGATCAGTGGGTGAATGAATTTACAACTGAAGGAAGGCAGCATGATGCAGTCGATGATCAGTGGGTTAATGAATTCTCAAATTTGAATGTTAATGATTGGGCAGATGAATTTCAGCAACAGCTTGGTGATAGCACTTCTGATAGTTGGGCTCAGGCATACAATGAGTTCTTAAATGAGCAAGTTGCTGCCAAGCAGCAGTTAGATAGTTCAAGGGGCGTCTATGTCTTTTCAGATTTAAATCCTTATGTTGGTCATGCAAATCCACTAAAAGAAGGCCAAGATCTATTCAGGAAAGGACTTTTAAGTGAAGCAGTTCTAGCATTGGAAGCTGAAGTCCTAAAAAACCCCGAGAATTCTGAAGGGTGGAGACTGCTTGGAATAGCACATGCAGAGAATGATGATGATCAACAGGCTATTGCAGCAATGATGCGTGCGCAGGAGGCTGACCCAACAAACCTGGAAGTGCTTCTTGCTCTTGGTGTCAGTCATACAAATGAACTGGAGCAACCAGCTGCTCTGAAGTATCTATATGGATGGTTGCGCCATCACCCAAAATATGGAACACTTGCCCCACCTGAGATGTCTGATTCTTTGTACTATGCTGATGTTGCTAGGTTATTCAATGAAGCAGCTGAACTCTCGCCTGATGATGCAGATGTCCACATAGTTCTTGGGGTCATGTACAATTTATCCAGAGAATATGACAAGGCCATTCTTTCTTTTGAAAGAGCACTAAAACTTAAGCCGCAGGATTACTCTCTATGGAACAAGCTGGGTGCAACACAAGCAAACAGTGTTCAAAGTGCTGATGCAATAATGGCTTATCAACAGGCACTGGATTTAAAGCCTAATTATGTTCGTGCTTGGGCAAATATGGGGATCAGTTATGCAAACCAGGGTATGTATGATGAGTCCATTCGTTATTATGTTCGAGCACTTGCCATGAATCCAAAAGCAGAGAATGCATGGCAATATTTGAGGATTTCATTGAGCTGTGCTTCTAGGAATGACATGTTGGAAGCTTGTGATAGTCGTAATTTGGACCTTCTCCAGAAGGAGTTTCCACTACAGTAA 2193 0.4482 MAMRDLVSGSAACGDSSSSSSAANPLASLANALIGSSSKTQERLKEIPTSTPTDPASQFYSPANYLPGSELDKPLLDANSQGSEFLQRFRGGGATGLEETWDEIQREGAIAQTRQLLPPLQQPPLEGTPQRVLSSFLHSFLDSSRGGVPFHPAPLPMLGLSEGDKQCIRDRSSIMARHLFADKSEEFIDAQVNALLCSLDIDSNVRGKGPMPERFRELEDYWNESQGNLRLGAPAADGWITEFSQHREKYDNPDSWANSFEQQYGANGWASEFERSQLSSVDQMRGMNMPNFAAMEQTRMLANTLAQNGDPKFQNSKFLQFVSKMSRGELIIDDNQVKENAASGDWATEYNQQYNHGHAWAGEFLNDKVYHGPDQWVNEFTTEGRQHDAVDDQWVNEFSNLNVNDWADEFQQQLGDSTSDSWAQAYNEFLNEQVAAKQQLDSSRGVYVFSDLNPYVGHANPLKEGQDLFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAQEADPTNLEVLLALGVSHTNELEQPAALKYLYGWLRHHPKYGTLAPPEMSDSLYYADVARLFNEAAELSPDDADVHIVLGVMYNLSREYDKAILSFERALKLKPQDYSLWNKLGATQANSVQSADAIMAYQQALDLKPNYVRAWANMGISYANQGMYDESIRYYVRALAMNPKAENAWQYLRISLSCASRNDMLEACDSRNLDLLQKEFPLQ 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01957 730 ProSiteProfiles TPR repeat profile. 659 692 IPR019734 GO:0005515
Cca10g01957 730 ProSiteProfiles TPR repeat profile. 492 525 IPR019734 GO:0005515
Cca10g01957 730 ProSiteProfiles TPR repeat region circular profile. 659 691 - -
Cca10g01957 730 ProSiteProfiles TPR repeat region circular profile. 591 624 - -
Cca10g01957 730 PANTHER PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 1 729 IPR024111 -
Cca10g01957 730 ProSiteProfiles TPR repeat profile. 591 624 IPR019734 GO:0005515
Cca10g01957 730 MobiDBLite consensus disorder prediction 37 64 - -
Cca10g01957 730 MobiDBLite consensus disorder prediction 1 23 - -
Cca10g01957 730 Pfam Tetratricopeptide repeat 577 624 - -
Cca10g01957 730 Pfam Tetratricopeptide repeat 462 524 - -
Cca10g01957 730 SUPERFAMILY TPR-like 443 729 IPR011990 GO:0005515
Cca10g01957 730 SMART tpr_5 625 658 IPR019734 GO:0005515
Cca10g01957 730 SMART tpr_5 591 624 IPR019734 GO:0005515
Cca10g01957 730 SMART tpr_5 492 525 IPR019734 GO:0005515
Cca10g01957 730 SMART tpr_5 659 692 IPR019734 GO:0005515
Cca10g01957 730 Pfam Tetratricopeptide repeat 660 691 IPR001440 GO:0005515
Cca10g01957 730 Gene3D Tetratricopeptide repeat domain 439 730 IPR011990 GO:0005515
Cca10g01957 730 PANTHER BNAC09G53570D PROTEIN 1 729 - -
Cca10g01957 730 ProSiteProfiles TPR repeat profile. 625 658 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01957 604 722 Glycosyltransferase AT3G04240 31.933 9.11e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01957 K13342 - gmx:100789878 1334.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01957 10 37336165 37354766 Cca10g01957 10 37336165 37354766 ECH