Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca10g01944 | ATGGCAAAAGCTTCTCTTTTTCTCACGCTTCTCTcagcagcatgcatagtggcaacagcaacatcaacatcagcatcaagccccagcagcTTCATAAAATCGTCGTGCAGCAGCACGCAGTACCCAGCCCTGTGCGTCTCCTCGCTCTCGGTCTACGCGTCGAGCATCAAGCAGGACCCGCACGAGCTGGTCCAGACCGCACTGTCGGTGAGCCTGAACCGGACCGAGACGACGAAGGCGTTCGTGGCGAAGTGCAACCGGTTCAGGGGGTTGAAGGCGCGGGAGTACGCGGCGCTGAAGGACTGCGCGGAGGAGATAAGCGACAGCGTGGACCGGCTGAGGCGGTCGCTGAAGGAGCTGAAGCTGTGCAAGGGCAAGGGGGAGGACTTCACGTGGCACATCAGCAATGTGGAGACGTGGGTCAGCTCTGCCCTCACGGACGAGTCCACGTGCGGGGATGGCTTCGCTGGGAAGGGGCTTAATGGTAAAATCAAGGACTCCATTAGGGCTAAAATGGTAAATGTCGCTCAGGTCACCAGCAATGCTCTCTCCCTCATCAACCAGTATGCTGCCAAACACTAG | 582 | 0.5292 | MAKASLFLTLLSAACIVATATSTSASSPSSFIKSSCSSTQYPALCVSSLSVYASSIKQDPHELVQTALSVSLNRTETTKAFVAKCNRFRGLKAREYAALKDCAEEISDSVDRLRRSLKELKLCKGKGEDFTWHISNVETWVSSALTDESTCGDGFAGKGLNGKIKDSIRAKMVNVAQVTSNALSLINQYAAKH | 193 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca10g01944 | 193 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 15 | - | - | |
| Cca10g01944 | 193 | Pfam | Plant invertase/pectin methylesterase inhibitor | 30 | 185 | IPR006501 | GO:0004857 | |
| Cca10g01944 | 193 | SMART | PMEI_2 | 27 | 185 | IPR006501 | GO:0004857 | |
| Cca10g01944 | 193 | PANTHER | PECTINESTERASE INHIBITOR-LIKE | 9 | 193 | - | - | |
| Cca10g01944 | 193 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 29 | 189 | IPR035513 | - | |
| Cca10g01944 | 193 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 28 | 189 | IPR035513 | - | |
| Cca10g01944 | 193 | CDD | PMEI-like_3 | 39 | 191 | - | - | |
| Cca10g01944 | 193 | PANTHER | PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN | 9 | 193 | - | - | |
| Cca10g01944 | 193 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 5 | 189 | IPR006501 | GO:0004857 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca10g01944 | Cca-Chr10 | 37132071 | 37133201 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca10g01944 | 11 | 186 | Carbohydrate Esterase | AT3G14310 | 29.379 | 7.14e-21 | 87.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca10g01944 | - | - | gmx:100305900 | 290.041 |