Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01943 ATGGAAGCTAACCCTTTGAAACTAGCTTTCCACCAAGTTCTCACAATTGTTGCATTCATCCTTCTAGCCAAATCCAACATCAGTTCATCTTGCGATTACAATTCTACCACCCCCACAAATTCCACTCAAACCAACACTGATTACACTCCCTCCTATTACGGCAACACAACCATTCCATCAAATTACACTCAAACCTTCAGAAACTACATCATAACCTCTTGCAATTCAACAACATATCCAACAGTATGCTACAGCTCCTTATCCCCCTATGCTTCAGAAATTGAAGCAGATCCTCTGAGGCTATGCAACGTGTCTCTCTCCCTTGCCTTAGAGGCAGCAAATAGAGCATCGTCCGCCATATCAAAGATTCTGAGCACCAACAATTTCCCAGGAATTGCTGAACAAGTGGTGCAAGATTGCCTTGGCAATGTCAAAGATTCCATTGGTGAACTCAAAGATTCCCTTGATGCCATGGGACATTTGGATGGTGTTGATAAAGAGTTTCAGATTAGCAACATAAAGACATGGGTGAGTGCTTCAATCACCAATGATCAAACGTGCTCAGATGGGTTTGATGAGATGAACGTTGATGCCACTTTGAGGGGAAAAATCAGAAAGATTATTTTGGATGTGGCAAGGAAGACTAGCAATGCTTTGTATTTCATCAACAACAACATATACTAA 684 0.4152 MEANPLKLAFHQVLTIVAFILLAKSNISSSCDYNSTTPTNSTQTNTDYTPSYYGNTTIPSNYTQTFRNYIITSCNSTTYPTVCYSSLSPYASEIEADPLRLCNVSLSLALEAANRASSAISKILSTNNFPGIAEQVVQDCLGNVKDSIGELKDSLDAMGHLDGVDKEFQISNIKTWVSASITNDQTCSDGFDEMNVDATLRGKIRKIILDVARKTSNALYFINNNIY 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01943 227 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 224 IPR035513 -
Cca10g01943 227 CDD PMEI-like_3 72 224 - -
Cca10g01943 227 SMART PMEI_2 65 221 IPR006501 GO:0004857
Cca10g01943 227 Gene3D Invertase/pectin methylesterase inhibitor family protein 66 225 IPR035513 -
Cca10g01943 227 Pfam Plant invertase/pectin methylesterase inhibitor 70 219 IPR006501 GO:0004857
Cca10g01943 227 PANTHER PECTINESTERASE INHIBITOR-LIKE 11 225 - -
Cca10g01943 227 PANTHER PECTINESTERASE INHIBITOR 4 11 225 - -
Cca10g01943 227 TIGRFAM PME_inhib: pectinesterase inhibitor domain 59 224 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01943 Cca-Chr10 37106810 37107743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01943 72 224 Carbohydrate Esterase AT3G14310 28.025 2.88e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01943 - - gmx:100527443 347.436