Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01942 ATGGCCAGAAATCTTGGCCTAATTGTCTTCATATCCTTGTTTTCTCTGTCTTCCCCAGCCCTAACAACCATTTTCTCAAATGCCATTGATTTTTGGTGCAATAAAACCCCACATCCTCAAACATGCAAGCACTTTGCCGCCACAAATCATCACCAATTTCAAGATGGTATCCCAAAAAGTGCATCACAATTCAAGAACCTCATCCTCAGAATTGCAATGGACCAATCATTGAAAACCCAAACTCATATCATGTGGTTGGGATCCAAATGTGTGAGCAAGCAAGAAAAAGAAGCGTGGAGAGATTGCATAACCCTTTATCAAGACACCATCAACATTCTCAACCAAGCCCTTAACCCTACGAAACAAAGCACTAGCTTTGATCTCCAAACATGGCTTAGCACAGCCTTAACCAACATTGACACATGCCAAACCGGGTTCCAAGAGCTTGGGGTTAGCAACAACAATGTTCTATCTCTCATTCCCAACAAGAATATCTCAGAGATCATAAGCAATTTTTTGGCTCTTAATAATGCTTTTTCGTTAATTCCTTCAAAGACTAACGAAGATGGCTTCCCAAGATGGTTATCACCCGGTGATAGGAAGCTTGTAGAGTCACCATTGTTATCACCAGATGTTGTGGTAGCTAAAGATGGTTCAGGGAATTTTGAGACCATCAAAGAAGCTTTGAAAGCAGTTTCCAAAAGGAGTGGGAGAAAGAGGTTTGTGATATATGTTAAGCGTGGGGTTTACGATGAAAACATTGTGATTGGAAAATCTTTGAAGAATATTATGTTGTATGGTGATGGTATAAGGCTCACAATCATTTCTGGTAATCGAAGTGTTGGAGGAGGTTCTACCACTTTTAATTCAGCAACAGTTGCGGTGACAGGAGATGGGTTCATGGCACGTGACATGACATTCCGCAACACAGCAGGAGCAGAAAAGCACCAAGCGGTGGCATTGCGTTGTGGTGCAGACCTCTCTGTCTTCTACCGCTGTGGCTTTGAAGGGTACCAAGACACTCTCTATGTCCACTCCCAAAGACACTTCTACAAGGAATGCCACATTTATGGTACAGTCGACTTCATCTTTGGCAACGCCGCTGTTGTCTTTCAATCCTGCAATATATATGCCAGAAGGCCAATGCCAAAACAGAAAAATGCCATAACAGCTCAAGGTAGAACAGATCCGAATCAAAACACTGGGATTTGCATCCAGAACTCGAATGTAATGGCTGGTGAAGACCTAGTGCCCGTGTTGAGTTCCTTCAAAACCTTCTTGGGTAGGCCATGGAAGGAGTATTCAAGGACAGTGTTCATACATACTTACATTGATGGGTTGGTAGACCCTGCAGGGTGGTTAGAGTGGAAAGGCGATTTTGCCCTCGACACTTTGTATTATGGAGAGTATATGAACCTTGGTCCTAGGGGTTCCACAAGAGGTAGAGTCAAATGGCGTGGTTACCATGCCATAACAAATGCAACCGAAGCATCCAAATTCACGGTTGAAAATTTTATTGCTGGAAGATCATGGTTACCAGCCACAGGCATTCCATTCTTCTCCGGACTCTACTATATAGTTAATTAA 1587 0.4291 MARNLGLIVFISLFSLSSPALTTIFSNAIDFWCNKTPHPQTCKHFAATNHHQFQDGIPKSASQFKNLILRIAMDQSLKTQTHIMWLGSKCVSKQEKEAWRDCITLYQDTINILNQALNPTKQSTSFDLQTWLSTALTNIDTCQTGFQELGVSNNNVLSLIPNKNISEIISNFLALNNAFSLIPSKTNEDGFPRWLSPGDRKLVESPLLSPDVVVAKDGSGNFETIKEALKAVSKRSGRKRFVIYVKRGVYDENIVIGKSLKNIMLYGDGIRLTIISGNRSVGGGSTTFNSATVAVTGDGFMARDMTFRNTAGAEKHQAVALRCGADLSVFYRCGFEGYQDTLYVHSQRHFYKECHIYGTVDFIFGNAAVVFQSCNIYARRPMPKQKNAITAQGRTDPNQNTGICIQNSNVMAGEDLVPVLSSFKTFLGRPWKEYSRTVFIHTYIDGLVDPAGWLEWKGDFALDTLYYGEYMNLGPRGSTRGRVKWRGYHAITNATEASKFTVENFIAGRSWLPATGIPFFSGLYYIVN 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01942 528 Pfam Plant invertase/pectin methylesterase inhibitor 28 175 IPR006501 GO:0004857
Cca10g01942 528 CDD PMEI-like_3 32 180 - -
Cca10g01942 528 PANTHER PECTINESTERASE 8 522 - -
Cca10g01942 528 Pfam Pectinesterase 211 508 IPR000070 GO:0030599|GO:0042545
Cca10g01942 528 SMART PMEI_2 24 175 IPR006501 GO:0004857
Cca10g01942 528 ProSitePatterns Pectinesterase signature 1. 237 256 IPR018040 -
Cca10g01942 528 ProSitePatterns Pectinesterase signature 2. 356 365 IPR033131 -
Cca10g01942 528 PANTHER PECTINESTERASE 8 522 - -
Cca10g01942 528 SUPERFAMILY Pectin lyase-like 208 522 IPR011050 -
Cca10g01942 528 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 179 IPR035513 -
Cca10g01942 528 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 179 IPR035513 -
Cca10g01942 528 Gene3D - 207 523 IPR012334 -
Cca10g01942 528 TIGRFAM PME_inhib: pectinesterase inhibitor domain 1 177 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01942 Cca-Chr10 37035896 37039750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01942 1 523 Carbohydrate Esterase AT2G45220 55.534 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01942 K01051 - gmx:100776412 891.723