Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01941 ATGGACTTGAAGACAAATCTTACTCCTGTCCTTACTGATACCACACCCTTAACAAGGTCAAGGCTTGGTGTGCCTTCAGGTTTGTCACCTTCTTACTCTTCTAAAGGGGCAACCTTTCCCCATGGTCCCTTGCTGGCAATTCCAAGGAAGAAGACAGGAATTCTTGAAGATGTTCGTTCTAACGGTTGGCTTGATGCCATGAAATCATCTTCTCCTACTCACAATAAAGTATCCAAGGATGTTAGTCATGGGATTGGATCATCTGATGCTGCTTATAATTCCTGGCTGCTTAAGTTTCCATCAGCACTTGCATCGTTTGATCAAATTGCAAACTGTGCTAAGGGGAAGAGAATAGTATTGTTTCTGGATTATGATGGGACTCTTTCACCCATTGTGGACAATCCTGACTGCGCTTTCATGTCAGACAATATGCGTGCTGCTGTTAAAAATGTCGCAGAATGTTTTACAACGGCAATAATTAGTGGAAGAAGGCGCGACAAGGTAGTTTGTGAATTTGTTGGAGTAAGAGAGCTCTATTATGCTGGTAGTCATGGGATGGACATTATTTGTCCTCGTAGACAATCTAATTCTGATAATCACCCTGAGTGCATTAGTTCTGCTGACAAACAGGTACTATTGTATGCTGATCAACTAATGTTTGTGCAGGTACTTGAGTTGCTCAAGGAGTGTACAAAAGACATTGAAGGAGCATTAGTTGAGAACAATAAATTTTGTGCGTCTGTGCATTACCGCAATGTAGATCAAGAGAATTGGAGTATTGTGGGACAACGTGTATATGATGTTCTGAAGGATTACCCACGTTTGCGTTTAACTCATGGGCGGAAGGTTTTAGAGGTCCGGCCAGTGATCGACTGGGATAAGGGAAAAGCTGTCACATTTCTACTTGAGTCACTTGGACTTAACAATTGTGATGACGTGCTAGCAATATATGTTGGAGATGATAGAACAGATGAAGATGCATTTAAGGCTTTGAGAGAAGTTAATAAAGGTTGTGGCATCTTAGTGTCCCCCGTCCCAAAAGAAACCAACGCAGTTTACTCTCTTCGTGATCCCTCAGAGGTGATGGtgttgaaagcatga 1101 0.4169 MDLKTNLTPVLTDTTPLTRSRLGVPSGLSPSYSSKGATFPHGPLLAIPRKKTGILEDVRSNGWLDAMKSSSPTHNKVSKDVSHGIGSSDAAYNSWLLKFPSALASFDQIANCAKGKRIVLFLDYDGTLSPIVDNPDCAFMSDNMRAAVKNVAECFTTAIISGRRRDKVVCEFVGVRELYYAGSHGMDIICPRRQSNSDNHPECISSADKQVLLYADQLMFVQVLELLKECTKDIEGALVENNKFCASVHYRNVDQENWSIVGQRVYDVLKDYPRLRLTHGRKVLEVRPVIDWDKGKAVTFLLESLGLNNCDDVLAIYVGDDRTDEDAFKALREVNKGCGILVSPVPKETNAVYSLRDPSEVMVLKA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01941 366 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 363 IPR044651 GO:0004805|GO:0005992
Cca10g01941 366 Pfam Trehalose-phosphatase 121 359 IPR003337 GO:0003824|GO:0005992
Cca10g01941 366 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 120 332 IPR006379 -
Cca10g01941 366 Gene3D - 120 355 IPR023214 -
Cca10g01941 366 SUPERFAMILY HAD-like 119 362 IPR036412 -
Cca10g01941 366 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 363 - -
Cca10g01941 366 TIGRFAM T6PP: trehalose-phosphatase 116 362 IPR003337 GO:0003824|GO:0005992
Cca10g01941 366 CDD HAD_TPP 119 363 - -
Cca10g01941 366 Gene3D - 207 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01941 Cca-Chr10 37031037 37033761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01941 114 364 Trehalose Biosynthesis Gene Families AT1G70290 26.838 2.77e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01941 K01087 - gmx:100783008 599.356