Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01938 ATGAATAATTTTTCCCATGTTCCCCCCGGTTTTAGGTTCCACCCCACTGATGAAGAACTTGTTGATTACTACCTAAGGAAGAAAGTTACCTCAAGGAGGATTGACCTCGATGTCATAAAAGATGTTGACCTCTATAAAATTGAGCCATGGGATCTTCAAGAGCTTTGCAGAATAGGAACAGAAGAGCAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCTACTGGAACTCGCACAAATAGAGCAACAGCAGCAGGGTTTTGGAAAGCAACTGGAAGAGACAAAGCAATCTATTCAAAGCATGACTTGATAGGGATGAGGAAAACCCTAGTCTTTTATAAAGGTCGAGCCCCCAATGGACAAAAATCAGATTGGATCATGCACGAGTATCGACTTGAAACAGATGAAAATGGCACTCCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAAAAGAGACTAACAACCATGCGTAAATTGAGTGAGCATGATTCTCCCTGTTGGTATGATGACCAAGTCTCTTTCATGCAAGACTTGGACTCACCAAAGCAAACCTCTCAACCTAATTTGCCCTACCAGTTACCATATCCTTGCAAGAAAGAGTTAGATTTGCAATACCATTTACCTCTCTCCCAGCTTCCATTGGAGAACCAAAAATTACTTCAATCAATGACACCATATGGTATAGATCAAGAAAACCATGCTATGATCATGCATCAAGTTCAACACTCTGGTCAACAAAATTTTCAGGCAGTGTTTGGAAACAGTTCCAATGAGCAAGTGGCTGATTGGAGAGCTCTAGACAAGTATGTTGCTTCACAGCTTAGTCAAGAAGATGCATCCAAAGACAATAGTTACTCAAACACAGGCAACATCTTTCATGTGAAGAACAACAGCAATGTTGAACAGTTGAGGGACTTGGACAAGGAAGAAATGATGCCTGAAAACGCCTCAACATCAAACTCAAGCTGTCCAATTGACATGTGGAAATAG 1005 0.407 MNNFSHVPPGFRFHPTDEELVDYYLRKKVTSRRIDLDVIKDVDLYKIEPWDLQELCRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRLTTMRKLSEHDSPCWYDDQVSFMQDLDSPKQTSQPNLPYQLPYPCKKELDLQYHLPLSQLPLENQKLLQSMTPYGIDQENHAMIMHQVQHSGQQNFQAVFGNSSNEQVADWRALDKYVASQLSQEDASKDNSYSNTGNIFHVKNNSNVEQLRDLDKEEMMPENASTSNSSCPIDMWK 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01938 334 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Cca10g01938 334 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Cca10g01938 334 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Cca10g01938 334 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 325 - -
Cca10g01938 334 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 325 - -
Cca10g01938 334 MobiDBLite consensus disorder prediction 315 334 - -
Cca10g01938 334 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Cca10g01938 334 MobiDBLite consensus disorder prediction 318 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01938 Cca-Chr10 36989052 36991094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01938 1 334 NAC Transcription Factor Family AT1G12260 56.640 3.05e-137 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca10g01938 NAM 3.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01938 - - gmx:100775867 598.586