Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01934 ATGGACTTGAAGACAAATCTTACTCCTGTCCTTACTGATACCACACCCTTAACAAGGTCAAGGCTTGGTGTGCCTTCAGGTTTGTCACCTTCTTACTCTTCTAAAGGGGCAACCTTTCCCCATGGTCCCTTGCTGGCAATTCCAAGGAAGAAGACAGGAATTCTTGAAGATGTTCGTTCTAACGGTTGGCTTGATGCCATGAAATCATCTTCTCCTACTCACAATAAAGTATCCAAGGATGTTAGTCATGGGATTGGATCATCTGATGCTGCTTATAATTCCTGGCTGCTTAAGTTTCCATCAGCACTTGCATCGTTTGATCAAATTGCAAACTGTGCTAAGGGGAAGAGAATAGTATTGTTTCTGGATTATGATGGGACTCTTTCACCCATTGTGGACAATCCTGACTGCGCTTTCATGTCAGACAATATGCGTGCTGCTGTTAAAAATGTCGCAGAATGTTTTACAACGGCAATAATTAGTGGAAGAAGGCGCGACAAGGTTTGTGAATTTGTTGGAGTAAGAGAGCTCTATTATGCTGGTAGTCATGGGATGGACATTATTTGTCCTCGTAGACAATCTAATTCTGATAATCACCCTGAGTGCATTAGTTCTGCTGACAAACAGGGTATTGAAGTCAATTTATTCCAACCTGCTGCTGAATTCCTCCCCATGATTGAAGAGGTACTTGAGTTGCTCAAGGAGTGTACAAAAGACATTGAAGGAGCATTAGTTGAGAACAATAAATTTTGTGCGTCTGTGCATTACCGCAATGTAGATCAAGAGAATTGGAGTATTGTGGGACAACGTGTATATGATGTTCTGAAGGATTACCCACGTTTGCGTTTAACTCATGGGCGGAAGGTTTTAGAGGTCCGGCCAGTGATCGACTGGGATAAGGGAAAAGCTGTCACATTTCTACTTGAGTCACTTGGACTTAACAATTGTGATGACGTGCTAGCAATATATGTTGGAGATGATAGAACAGATGAAGATGCATTTAAGGCTTTGAGAGAAGTTAATAAAGGTTGTGGCATCTTAGTGTCCCCCGTCCCAAAAGAAACCAACGCAGTTTACTCTCTTCGTGATCCCTCAGAGGTGATGGGATTTCTGACATCACTTGCGGGATGGAAATCAAGCATTCAAGGTCGCTGA 1155 0.426 MDLKTNLTPVLTDTTPLTRSRLGVPSGLSPSYSSKGATFPHGPLLAIPRKKTGILEDVRSNGWLDAMKSSSPTHNKVSKDVSHGIGSSDAAYNSWLLKFPSALASFDQIANCAKGKRIVLFLDYDGTLSPIVDNPDCAFMSDNMRAAVKNVAECFTTAIISGRRRDKVCEFVGVRELYYAGSHGMDIICPRRQSNSDNHPECISSADKQGIEVNLFQPAAEFLPMIEEVLELLKECTKDIEGALVENNKFCASVHYRNVDQENWSIVGQRVYDVLKDYPRLRLTHGRKVLEVRPVIDWDKGKAVTFLLESLGLNNCDDVLAIYVGDDRTDEDAFKALREVNKGCGILVSPVPKETNAVYSLRDPSEVMGFLTSLAGWKSSIQGR 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01934 384 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 384 IPR044651 GO:0004805|GO:0005992
Cca10g01934 384 Gene3D - 118 201 IPR023214 -
Cca10g01934 384 Gene3D - 215 383 IPR023214 -
Cca10g01934 384 TIGRFAM T6PP: trehalose-phosphatase 221 375 IPR003337 GO:0003824|GO:0005992
Cca10g01934 384 SUPERFAMILY HAD-like 119 375 IPR036412 -
Cca10g01934 384 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 384 - -
Cca10g01934 384 CDD HAD_TPP 119 368 - -
Cca10g01934 384 Pfam Trehalose-phosphatase 121 365 IPR003337 GO:0003824|GO:0005992
Cca10g01934 384 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 120 338 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01934 Cca-Chr10 36902197 36907773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01934 114 375 Trehalose Biosynthesis Gene Families AT1G70290 26.761 4.41e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01934 K01087 - gmx:100783008 663.299