Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01928 ATGCTTCTACCTTTCAAGAGATTGTGTGAGCAAAGAAAGGTGCATGTAGATGTCGTAGTGATTGAATCAGATGATGTGGCAACTGCAATAGCAGAGGAAGTAGCTAAGGGTGTTATAACCAAACTTATTGTTGGAGCTTCTTCTCGAGGCATATTTAAAAGTAAACATAAGGGTATGTCTGCAAAAATATCAGCATGCACTCCAAGATTTTGTACAATTTATGCTGTTTCAAAGGGAAAATTGTCCATACGGCCATCAGACATGCCTATTGATGGAAGCATTATAGATGATGCTAGTGAAACCAGTTTTTCCTCCAGCAGTTCATCAAACTACCATTCCACCTCTCAAACAGAATCTACATCAGTTTCATCATATGCTGGTTTACACTCCTCTTCCCTAGCAACACAACGATTTCAAGCTCTTTCCAGTATAAACCATTCCCTTCTCAGCACAACTCCCTGTTTAGTTGAAACTAATCATTCTAGAGGCCAATCTCTAGATCTTGGGAGAGATACTGCTACAAGTTCCGCCAGAAACTCGGACATTGATCATTCTTTAAGTCGGGTCTCTAGTTGCAAAAGCTTTATTTCCGATACTGAATCTTGGGTTCACGATCAAATTTCTGGCAAGGAGTTGACACTTGCAACTTCACTTCCGTCACCTAATAGGCAGGCAAAATTTAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGCCCAAGGACTGCATGCAGTAGCTCAAAGTGAGAAAATTGAAGCATCCCGAAAGCTGAATGACCTAACCAAGAGACGAACAGAAGAAACCATGAAAATGAAGGAGATTATTGCTAAGGAGGAGAAAGCAATAGAATTAGCAAAACTAGAAAAAGAGAAATATCAAGATGCATCAAGAGAAGCTGAATATTTGAAAGAATGTGCTGATAGAGAAGCTGCAGAAAGGAAAGAAACGGAGTTGAAAGCCATTCGTGCTGCAAAAGAGAAAGAAAAGCTGGAGGATGCTCTCAGTGGTTCCATGCCACAGTACCGGAAGTTTACATGGGATGAAATAGTCTCAGCTACTTCATCATTCTCTGAAGATCTAAAGATTGGAATGGGAGCATATGGAATAGTGTATAAGTGCAGTTTGTATCACACAACTGTTGCTGTTAAGGTTCTCAAAACTAATGAAAATTGCGAAAGCAAGCAATTCCAGCAGGAGTTAGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTTCTTCTTCTTGGTGCGTGTCCTGATCATGGATGCCTGGTGTATGAATATATGGAGAATGGTAACTTGGAGGACAGTCTACTACGAAAAAACAACACTGCTCCAATCCCATGGTTTGAGAGGTTTCGAATAGCTTGGGAAGTCGCATCGGCTCTGGCCTTCCTTCATAGCTCTAAGCCAGAACCTATCATTCATCGAGACCTGAAACCGGCAAACATCTTGCTTGGTCGTAACCTTGTCAGCAAGATTGGTGACATTGGCCTTTCTACAGTGCTCCATTCAGATAATTTGTCTACGATGTACAATGACACGGGACCTGTTGGGACACTCTGCTACATAGATCCTGAGTACCAAAGGACTGGGTCAATATCTCCAAAATCAGATGTTTATGCTTTTGGAATGGTGATCTTACAGTTATTGACAGCAAAACCAGCAATAGCACTTGCTCATAAGGTTGAAACAGCAATTGATGGCGGGAACTTAACAGATATATTGGATCCAGAGGCAGGGTCTTGGTCATTTCAAGAGACACTAGACTTGGCTTTGCTAGGACTGAGCTGTGCAGAACTTCGGCGTAGAGACCGACCTGATTTACAAGATCATGTGCTTCCAACACTAGAGAGATTGAAAGAAGTTGTTGATAGGGCCCAACATTCTTCTTCAATTGTTACTATTAAATCCAAACCTCCTAATCACTTCATCTGTCCAATACTACAGGATGTGATGGATGATCCTTGTGTTGCTGCGGATGGATACACATATGATCGTAAAGCAATTGAAAAGTGGCTCCAAGAGAACGACAAATCACCAATGACAAACATGGCTTTACCTCATAAGCACTTAATTCCTAATTACACACTTCTGTCAGCAATTTTGGAGTGGAAGTCCAGAGAATCGTGA 2139 0.4128 MLLPFKRLCEQRKVHVDVVVIESDDVATAIAEEVAKGVITKLIVGASSRGIFKSKHKGMSAKISACTPRFCTIYAVSKGKLSIRPSDMPIDGSIIDDASETSFSSSSSSNYHSTSQTESTSVSSYAGLHSSSLATQRFQALSSINHSLLSTTPCLVETNHSRGQSLDLGRDTATSSARNSDIDHSLSRVSSCKSFISDTESWVHDQISGKELTLATSLPSPNRQAKFNLELEKLRIELRHAQGLHAVAQSEKIEASRKLNDLTKRRTEETMKMKEIIAKEEKAIELAKLEKEKYQDASREAEYLKECADREAAERKETELKAIRAAKEKEKLEDALSGSMPQYRKFTWDEIVSATSSFSEDLKIGMGAYGIVYKCSLYHTTVAVKVLKTNENCESKQFQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGNLEDSLLRKNNTAPIPWFERFRIAWEVASALAFLHSSKPEPIIHRDLKPANILLGRNLVSKIGDIGLSTVLHSDNLSTMYNDTGPVGTLCYIDPEYQRTGSISPKSDVYAFGMVILQLLTAKPAIALAHKVETAIDGGNLTDILDPEAGSWSFQETLDLALLGLSCAELRRRDRPDLQDHVLPTLERLKEVVDRAQHSSSIVTIKSKPPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWLQENDKSPMTNMALPHKHLIPNYTLLSAILEWKSRES 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01928 712 ProSitePatterns Protein kinases ATP-binding region signature. 364 385 IPR017441 GO:0005524
Cca10g01928 712 Pfam Protein kinase domain 360 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01928 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Cca10g01928 712 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 1 708 - -
Cca10g01928 712 PANTHER OS02G0152300 PROTEIN 1 708 - -
Cca10g01928 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 641 712 IPR013083 -
Cca10g01928 712 Pfam U-box domain 643 710 IPR003613 GO:0004842|GO:0016567
Cca10g01928 712 Coils Coil 231 265 - -
Cca10g01928 712 SMART Ubox_2 645 707 IPR003613 GO:0004842|GO:0016567
Cca10g01928 712 Coils Coil 310 335 - -
Cca10g01928 712 ProSiteProfiles U-box domain profile. 641 712 IPR003613 GO:0004842|GO:0016567
Cca10g01928 712 SMART serkin_6 358 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01928 712 Gene3D Transferase(Phosphotransferase) domain 1 431 640 - -
Cca10g01928 712 CDD RING-Ubox_WDSUB1_like 646 686 - -
Cca10g01928 712 SUPERFAMILY Protein kinase-like (PK-like) 340 612 IPR011009 -
Cca10g01928 712 CDD STK_N 1 79 - -
Cca10g01928 712 Gene3D Phosphorylase Kinase; domain 1 336 430 - -
Cca10g01928 712 ProSiteProfiles Protein kinase domain profile. 358 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01928 712 SUPERFAMILY RING/U-box 638 710 - -
Cca10g01928 712 Coils Coil 277 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01928 Cca-Chr10 36748508 36757240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01928 1 709 U-box Gene Family AT4G25160 52.610 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Cca10g01928 Pkinase 1.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01928 - - gsj:114409387 1194.49