Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01918 ATGGCTTTGAGATTGATAGCGATTTCGGCAGTTTCTACGATATTAAGCTTTGTAGGTCTGCAGTTGTGCACAGACTTCTCTTGGGATAAACTTAAATCAGATGGACTAATTGGCTGGAATTTAATTCAGTTGGACAATGCCAGCCATGACACGGAGTTGGCTATGGGTTTATACACCACCATAGGGCTACTGGTGAATTGCATGATCAATTTATTTATCCTTCTCAATCTTTGTCTCAAGGCTGTGTTTTTCACAGAGTTATATGCTTCTGAAACTCGAAAACTTATTGAACGTCTTATTAATTATGTCATTTACAAGGGGACATTTCTACCACTAATTGTGCCACCAACAATTTATCAAGCAGGTCTTTGGTCAACTTGGTTGACTGTGCTTTGTTCTTTGAAGATGTTTCAAGCTTTGGCTAGAGATCGCTTGGAAAGGCTGAATGCATCTCCATCTGCCACACCCTGGACTTGTCTTCGTGTATATTCAGCATTGTTGTTTGTTTTCATGGTTGATGTTCTCTGGATAAGGCTTTGTCTGACAATATATAGAACACATGGGTCCTCTATGTATCTATTACTATTCTTTGAGCCTTCCAGTATTGCTTTTGAGACCCTACAGGCCATTCTGGTACATGGATTTCAGTTGCTTGACATATGGCTGCATCATTCAGCTTGCAATAGCAGTGATTTCCGAACACCTAAGCTACTTAACACGATAACCGCAGGTTCATTGTTGGAGTGGAAGGGAATTCTTATTCGGAACTTGGGGTTTTTCCTAGACATGGCAACATTTTTTATGGCACTTGGTCATTACTTGTATATATGGCGGCTTCATGGCATGGCATTCCATCTTGTAGATGCAGTGCTATTTCTAAATATACGTGCATTGCTTAGTGCAATAATAAATCGCGTAAAAGGCTTTGTCAAGCTAAGGATAGCTCTAGGAACACTTCATGCAGCTCTTCCTGATGCAACAACTGAGGAGCTAAGAGCATATGATGATGAATGTGCTATTTGTAGAGAACCTATGGCTAAGGCTAAAAAGCTAAGCTGCAATCATCTCTTCCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGAAATGTATACTTGTCCAACATGTCGCAAGCCACTTTTTGTAGGTGTGCCTGAAAATGAAACAAACTCTAATGCGGGGACAATATCTAGTGATGAGCAACTTGCTCGCCAAATAAGTGCAGGACTTGATCGGTCAAACTCTGCTAGACATACCCTGCCTACGGGATTGTATCCAAATCAGACACTAAACACTCCTGAAGGTGTTCATTGGAGGGGTGCAGGGCTGGACTCAGGTTGGTTGCATTCTTGGCCAAACCAAGGTGTTGATGGGGCTGGTCCATCTACTGCTGCCAGAACAGTTGGATTGGGAAGAGTTCAAATGATGATGAGGCATCTGGCATCTGTTGGCGAAACCTATGCTCAGACTGCCTTTGAAGATTCTTCTTGGAATCTTTGGCCCATTAATCCTTCTCAGGCTTCTGCAAGTGGTTCAACCATTCCTCCTGGGGGGGTAAGATCGCCAGTAGGAACCGGTAGTTTACATTTAAGGACTGCTTCTTCTGCTAATGATAATGTTGCAAATATACTTGCCATGGCTGAAACAGTTCGGGAGGTTCTACCTCATGTTCCAGATGATATGATATTCCAGGACTTGCAAAGGACAAATTCAGTCGCGATTACTGTGAATAATCTTCTTCAAATGTGA 1758 0.4226 MALRLIAISAVSTILSFVGLQLCTDFSWDKLKSDGLIGWNLIQLDNASHDTELAMGLYTTIGLLVNCMINLFILLNLCLKAVFFTELYASETRKLIERLINYVIYKGTFLPLIVPPTIYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSATPWTCLRVYSALLFVFMVDVLWIRLCLTIYRTHGSSMYLLLFFEPSSIAFETLQAILVHGFQLLDIWLHHSACNSSDFRTPKLLNTITAGSLLEWKGILIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAIINRVKGFVKLRIALGTLHAALPDATTEELRAYDDECAICREPMAKAKKLSCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFVGVPENETNSNAGTISSDEQLARQISAGLDRSNSARHTLPTGLYPNQTLNTPEGVHWRGAGLDSGWLHSWPNQGVDGAGPSTAARTVGLGRVQMMMRHLASVGETYAQTAFEDSSWNLWPINPSQASASGSTIPPGGVRSPVGTGSLHLRTASSANDNVANILAMAETVREVLPHVPDDMIFQDLQRTNSVAITVNNLLQM 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01918 585 Gene3D - 544 584 - -
Cca10g01918 585 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 386 IPR013083 -
Cca10g01918 585 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Cca10g01918 585 SMART ring_2 338 379 IPR001841 -
Cca10g01918 585 Pfam CUE domain 549 585 IPR003892 GO:0043130
Cca10g01918 585 SUPERFAMILY RING/U-box 325 386 - -
Cca10g01918 585 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 585 - -
Cca10g01918 585 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 585 - -
Cca10g01918 585 CDD CUE_RIN3_plant 546 583 IPR035667 -
Cca10g01918 585 CDD RING-H2_synoviolin 335 380 - -
Cca10g01918 585 Pfam Ring finger domain 336 380 IPR001841 -
Cca10g01918 585 ProSiteProfiles CUE domain profile. 545 585 IPR003892 GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01918 Cca-Chr10 36535631 36543957 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01918 57 421 C3H Transcription Factor Family AT3G16090 27.665 8.83e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01918 K10636 - gmx:100820578 1077.39