Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01912 ATGGGCACTCATCCTTTCATGCTTGCTATCACTATTTCCAACCTACTAATGTTGTTCTCTCAACTTTCTACAGCAACAACTGATAGCATCACCCAGTCACAGCCACTTCACGATGATGGCACCACCTTGGTTTCCAACGATGGAACCTTCGAGTTAGGGTTCTTCAGCCCCGGTAGTTCCACAAACCGCTACATAGGAGTTTGGTACAAAATCATCTCCGTTAAAACCATTGTTTGGGTTGCCAACCGTGACAACCCTGTCAAAGACAACAACAACACCATGCTAACCATAACCAAAGAGGGAAACCTCGTACTTCTCAACAACAGCAACAACCAAACTCTTTGGTCAACAAACATCACATTTTTCACCTCTCAGCCTTTGTTGAGTCCCATGGTTCAACTCTTGGACAATGGAAACTTGGTACTTAaagaaggaaacaacaacaacaacaacaaagaagaagaagaagaaAGTTTTTTGTGGCAAAGCTTTGATCACCCTTGTGACACACTCTTGCCAGGAATGAAGCTAGGATGGGACTTGAAAACAGGTAATAACCGGAAACTAACTGCATGGAAGAGTTGGGATGACCCTTCTTCAGGAAACTTCACTTGGGGTATGCTCCTTAGTAGCAACCCTGAATTGGTACTGTGGAAAGGTTCAATAGAGTACCACAGAAGTGGGCCTTGGAATGGGCCTGGGTTTAGTGGCCAGCCTGTGTTGAGACTCACTCCAATTGTTGACATCAAATTTGTCAATGATTCAAACGAGGTCTATTACTCTTACACCCTTAGGAACAAGTCCGTGATATCAATAACTTACTTGAACCAAACCCTTTCTCATCGCGAACGCATCACGTGGATTCCAGAGAACAAAACTTGGAGGGTTTACGAGTCTGTTCCTAGAGATGATTGTGATCCTTATAACCCTTGTGGCCCAAATGGAAATTGTATGGTGAATGAGACACCGATTTGCCAGTGTTTAGAAGGGTTCCAACCAAAAATTCACCAGAATTGGAACACGTTTGATTGGACAGAAGGATGTGTGCGAAGTGAACCTTGGAGTTGTGGGGTGGAGAATCAAGATGGTTTTCGTAGATTTGCTTCGATGAAAGTGCCTGATACTAGAAACTCTTGGGTCTATGAAAATATGACACTTGAGGATTGTAAGGCCAAATGCTTGGAAAATTGTTCTTGCATGGCTTATTCAAACTTGGACATAAGGGAAGGTGGCAGTGGTTGTTCCATTTGGTTTGGTAATCTTATTGATTTGAAATTGGTTCAAGCAAGCCAACAAGATCTATATATTCGAATGGCTGTTCCAGAGACAAGTAATTCAACTTCAAAGGGAAACACAAAAAAGAAGGCTTTAGTAATCACCATCCCACTTGTATCTGTCGCTATTATGCTATTTGTTGTCTTCCTTTGTATTTACAAAAGCAGAAGAAAGCATAAAGGAATGGAAGATGAAACAGAGAATATCATACCAACCGAAAAGAAAGATGAAGATGAAAATCAAGATTTTGAGCTTCCTTTCTTTGATTTTACTACAATATTTAATGCTACCAATGGTTTCTCAATGGACAACAAGCTTGGAGAAGGTGGTTTTGGACCTGTATATAAGGGTATGCTACTAGATGGACGAGAGATTGCCATCAAAAGGCTTTCAAAGAGTTCTAGACAAGGGATGACAGAATTTAAGAATGAAGTTATATTGTGTGCCAAACTTCAACATCGAAATCTTGTTAAGGTCCTTGGTTGTTGCGTTCAAGAGGAGGAGAAAATGTTATTGTATGAATACATGCCCAACAAAAGTCTTGACTCATTTATTTTTGATTCAACTCAAAGTAAACTTTTGGATTGGTCTAAGCGCTTCCACATTATATGTGCAATTGCTCGTGGACTTCTTTATCTACATCAAGATTCAAGATTGAGGATCATACATAGAGATCTCAAAGCAAGTAACATTTTGTTAGACAATGATATGAATCCAAAAATTTCTGATTTTGGCTTGGCAAGACTTTGTGGAGATGATCAAATCGAAGGAAATACAAGTAAAGTAGTTGGGACATATGGTTACATGGCTCCGGAATATGCCATTGATGGGTTATTCTCCGTAAAATCTGATGTATTTAGCTTTGGAATATTATTACTAGAGATTGTAAGCGGAAAAAAAAATAGAGGGCTTACATACACAAAAGATACTTATAATCTTATTGGGCATGCATGGAGATTATGGAAAGAAGGCAATCCAATAGAATTGATTGATGATTGTTTGGGAGACTCGTATGTTATACCAGAAGCCTTACGTTGCATACAAATTAGTCTTTTATGTCTACAATATCATCCAAATGATAGACCTAACATGGCATCTGTGATCGTTATGTTGACCAATGAAACAGATTTAGCTCAACCAAAGGAGCCTGGTTTCTTAATAGAAAGATTGGTCCCTGGTGAAGTAGAATCGTCTATTACAAAGCAAATCTCTTCTTCAGTTAATGAAGTATCTATTTCTCTATTGGATGCTAGATAA 2532 0.3859 MGTHPFMLAITISNLLMLFSQLSTATTDSITQSQPLHDDGTTLVSNDGTFELGFFSPGSSTNRYIGVWYKIISVKTIVWVANRDNPVKDNNNTMLTITKEGNLVLLNNSNNQTLWSTNITFFTSQPLLSPMVQLLDNGNLVLKEGNNNNNNKEEEEESFLWQSFDHPCDTLLPGMKLGWDLKTGNNRKLTAWKSWDDPSSGNFTWGMLLSSNPELVLWKGSIEYHRSGPWNGPGFSGQPVLRLTPIVDIKFVNDSNEVYYSYTLRNKSVISITYLNQTLSHRERITWIPENKTWRVYESVPRDDCDPYNPCGPNGNCMVNETPICQCLEGFQPKIHQNWNTFDWTEGCVRSEPWSCGVENQDGFRRFASMKVPDTRNSWVYENMTLEDCKAKCLENCSCMAYSNLDIREGGSGCSIWFGNLIDLKLVQASQQDLYIRMAVPETSNSTSKGNTKKKALVITIPLVSVAIMLFVVFLCIYKSRRKHKGMEDETENIIPTEKKDEDENQDFELPFFDFTTIFNATNGFSMDNKLGEGGFGPVYKGMLLDGREIAIKRLSKSSRQGMTEFKNEVILCAKLQHRNLVKVLGCCVQEEEKMLLYEYMPNKSLDSFIFDSTQSKLLDWSKRFHIICAIARGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGLARLCGDDQIEGNTSKVVGTYGYMAPEYAIDGLFSVKSDVFSFGILLLEIVSGKKNRGLTYTKDTYNLIGHAWRLWKEGNPIELIDDCLGDSYVIPEALRCIQISLLCLQYHPNDRPNMASVIVMLTNETDLAQPKEPGFLIERLVPGEVESSITKQISSSVNEVSISLLDAR 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01912 843 SMART blect_4 33 167 IPR001480 -
Cca10g01912 843 ProSiteProfiles PAN/Apple domain profile. 356 439 IPR003609 -
Cca10g01912 843 CDD STKc_IRAK 531 798 - -
Cca10g01912 843 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Cca10g01912 843 ProSiteProfiles Protein kinase domain profile. 525 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01912 843 CDD PAN_AP_plant 355 439 - -
Cca10g01912 843 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 198 IPR036426 -
Cca10g01912 843 PIRSF SRK 2 843 IPR024171 GO:0004674
Cca10g01912 843 Gene3D Transferase(Phosphotransferase) domain 1 601 807 - -
Cca10g01912 843 CDD B_lectin 39 167 IPR001480 -
Cca10g01912 843 Gene3D Phosphorylase Kinase; domain 1 498 600 - -
Cca10g01912 843 Gene3D - 21 164 IPR036426 -
Cca10g01912 843 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 36 836 - -
Cca10g01912 843 SUPERFAMILY Protein kinase-like (PK-like) 508 796 IPR011009 -
Cca10g01912 843 Pfam Protein tyrosine and serine/threonine kinase 526 793 IPR001245 GO:0004672|GO:0006468
Cca10g01912 843 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 36 836 - -
Cca10g01912 843 SMART serkin_6 525 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01912 843 Pfam S-locus glycoprotein domain 226 334 IPR000858 GO:0048544
Cca10g01912 843 Gene3D Hepatocyte Growth Factor 355 437 - -
Cca10g01912 843 Pfam D-mannose binding lectin 76 193 IPR001480 -
Cca10g01912 843 ProSiteProfiles EGF-like domain profile. 301 337 IPR000742 -
Cca10g01912 843 SMART ntp_6 359 438 IPR003609 -
Cca10g01912 843 Pfam PAN-like domain 356 424 IPR003609 -
Cca10g01912 843 Pfam Domain of unknown function (DUF3403) 797 843 IPR021820 GO:0004674
Cca10g01912 843 ProSiteProfiles Bulb-type lectin domain profile. 27 155 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01912 Cca-Chr10 36427207 36431061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01912 469 843 Receptor kinase-like Gene Family AT4G23150 50.919 5.24e-127 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca10g01912 PK_Tyr_Ser-Thr 7.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01912 - - gmx:100776310 1092.41